- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
AMP.2: 17 residues within 4Å:- Chain A: G.214, A.215, E.216, P.217, N.236, S.237, F.238, G.239, M.240, T.241, D.305, I.326, R.329, I.335, N.340
- Ligands: K.4, UNL.7
16 PLIP interactions:16 interactions with chain A- Hydrogen bonds: A:T.143, A:A.215, A:S.237, A:G.239, A:T.241, A:T.241, A:D.305, A:R.329
- Water bridges: A:N.236, A:N.236, A:T.241, A:T.241, A:E.242, A:R.329, A:N.340, A:N.340
AMP.13: 16 residues within 4Å:- Chain B: G.214, A.215, E.216, P.217, N.236, S.237, F.238, G.239, M.240, T.241, E.242, D.305, I.326, R.329, K.425
- Ligands: UNL.14
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:A.215, B:S.237, B:G.239, B:T.241, B:T.241, B:T.241, B:D.305, B:R.329, B:K.425
- Water bridges: B:N.236, B:E.242, B:T.303, B:I.326
- Salt bridges: B:K.425
- 1 x COA: COENZYME A(Non-covalent)
COA.3: 13 residues within 4Å:- Chain A: S.136, A.164, G.165, N.166, S.167, I.185, Y.188, R.191, K.337, Q.370, V.407, T.408
- Ligands: UNL.7
16 PLIP interactions:16 interactions with chain A- Hydrogen bonds: A:G.165, A:N.166, A:S.167, A:S.167, A:S.167, A:K.337, A:Q.370, A:T.408, A:T.408
- Water bridges: A:I.185, A:T.408, A:T.408
- Salt bridges: A:R.191, A:K.337, A:K.337
- pi-Stacking: A:Y.188
- 3 x K: POTASSIUM ION(Non-covalent)
K.4: 5 residues within 4Å:- Chain A: A.215, G.338, N.340
- Ligands: AMP.2, UNL.7
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:A.215, A:G.338
K.5: 8 residues within 4Å:- Chain A: M.84, K.85, R.86, G.88
- Chain B: K.129, G.156, C.157, L.158
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Metal complexes: B:K.129, B:G.156, A:K.85, A:G.88
K.6: 8 residues within 4Å:- Chain A: K.129, G.156, C.157, L.158
- Chain B: M.84, K.85, R.86, G.88
5 PLIP interactions:2 interactions with chain A, 2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: A:K.129, A:G.156, B:K.85, B:G.88, H2O.6
- 2 x UNL: UNKNOWN LIGAND
UNL.7: 10 residues within 4Å:- Chain A: S.137, G.138, F.142, T.143, G.144, T.241, G.338
- Ligands: AMP.2, COA.3, K.4
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:S.137, A:G.138, A:T.143, A:G.144, A:T.241, A:G.338
- Water bridges: A:G.338, A:N.340
UNL.14: 8 residues within 4Å:- Chain B: S.137, F.142, T.143, G.144, H.183, A.215, P.246
- Ligands: AMP.13
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:S.137, B:S.137, B:S.137, B:G.144, B:H.183
- Water bridges: B:H.183
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.8: 2 residues within 4Å:- Chain A: R.394, R.395
3 PLIP interactions:3 interactions with chain A- Salt bridges: A:R.394, A:R.395, A:K.410
SO4.15: 5 residues within 4Å:- Chain B: G.165, N.166, S.167, Y.188, R.191
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:N.166, B:S.167, B:S.167
- Water bridges: B:K.168, A:D.403
- Salt bridges: B:R.191
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.9: 3 residues within 4Å:- Chain A: Y.6, W.7, Y.123
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:W.7, A:Y.123
EDO.10: 2 residues within 4Å:- Chain A: I.33, E.294
2 PLIP interactions:2 interactions with chain A- Water bridges: A:D.87, A:D.87
EDO.11: 5 residues within 4Å:- Chain A: T.67, K.68, S.69, R.304, D.331
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:K.68, A:S.69, A:R.304, A:D.331
- Water bridges: A:R.329
EDO.16: 4 residues within 4Å:- Chain B: R.61, K.62, P.64, R.300
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.300
EDO.17: 3 residues within 4Å:- Chain B: W.7, E.8, N.116
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:W.7, B:E.8
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Joint Center for Structural Genomics (JCSG), Crystal structure of a Putative Acyl-CoA ligase (BT_0428) from Bacteroides thetaiotaomicron VPI-5482 at 2.20 A resolution. To be published
- Release Date
- 2015-01-21
- Peptides
- Phenylacetate-coenzyme A ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
- 1 x COA: COENZYME A(Non-covalent)
- 3 x K: POTASSIUM ION(Non-covalent)
- 2 x UNL: UNKNOWN LIGAND
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Joint Center for Structural Genomics (JCSG), Crystal structure of a Putative Acyl-CoA ligase (BT_0428) from Bacteroides thetaiotaomicron VPI-5482 at 2.20 A resolution. To be published
- Release Date
- 2015-01-21
- Peptides
- Phenylacetate-coenzyme A ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D