SMTL ID : 4r3j.1 (1 other biounit)

Structure of a putative peptidoglycan glycosyltransferase from Atopobium parvulum in complex with cefapirin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

monomer

Ligands

1 x CFU: (2R)-2-[(1R)-1-(acetylamino)-2-oxoethyl]-5-methyl-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid(Covalent)

CFU.1: 10 residues within 4Å: Chain A: G.209, S.210, Y.248, S.265, N.267, T.404, K.418, T.419, G.420, T.421 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:T.404 Hydrogen bonds: A:S.210, A:S.265, A:N.267, A:T.421, A:T.421, A:T.421, A:T.421, A:T.421 Salt bridges: A:K.418

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: Y.82, H.84, D.85, G.86, M.87, S.89, V.92, G.93, T.181, H.182 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.86, A:G.93, A:G.93, A:H.182

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 3 residues within 4Å: Chain A: S.96, T.97, Q.98 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.96, A:T.97, A:T.97, A:T.97, A:Q.98 PO4.4: 3 residues within 4Å: Chain A: Q.382, S.385, A.386 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.382, A:A.386 Water bridges: A:S.385, A:D.387

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Filippova, E.V. et al., Structure of a putative peptidoglycan glycosyltransferase from Atopobium parvulum in complex with cefapirin. To be Published

Release Date

2014-09-17

Peptides

Peptidoglycan glycosyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidoglycan glycosyltransferase

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