- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.51 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 3JL: 3-(3-carboxypropyl)benzene-1,2-dicarboxylic acid(Non-covalent)
- 3 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NAP.2: 27 residues within 4Å:- Chain A: G.9, A.10, T.11, G.12, A.13, V.14, A.36, S.37, R.39, S.40, T.57, S.71, A.72, G.73, T.76, N.94, T.95, R.99, P.126, N.127, C.128, S.158, G.159, G.161, M.162, G.329
- Ligands: 3JL.1
28 PLIP interactions:28 interactions with chain A- Hydrophobic interactions: A:V.14
- Hydrogen bonds: A:G.9, A:T.11, A:T.11, A:T.11, A:G.12, A:A.13, A:V.14, A:S.37, A:S.37, A:R.39, A:S.40, A:S.40, A:N.94, A:R.99, A:P.126, A:C.128, A:M.162
- Water bridges: A:G.15, A:T.57, A:A.72, A:S.74, A:S.74, A:K.79, A:Y.80, A:Y.80, A:G.163
- Salt bridges: A:R.39
NAP.8: 16 residues within 4Å:- Chain B: G.9, T.11, G.12, A.13, A.36, S.37, R.39, S.40, T.57, S.71, A.72, T.76, G.161, M.162, G.163
- Ligands: NAP.9
17 PLIP interactions:17 interactions with chain B- Hydrophobic interactions: B:R.39
- Hydrogen bonds: B:G.9, B:T.11, B:T.11, B:T.11, B:G.12, B:A.13, B:S.37, B:S.37, B:S.40, B:S.40, B:T.76, B:K.79, B:M.162, B:G.163
- Water bridges: B:V.14, B:T.57
NAP.9: 27 residues within 4Å:- Chain B: G.9, A.10, T.11, G.12, A.13, V.14, A.36, S.37, S.40, S.71, A.72, G.73, T.76, N.94, T.95, R.99, P.126, N.127, C.128, S.158, G.159, G.161, M.162, G.329, A.330
- Ligands: 3JL.7, NAP.8
19 PLIP interactions:19 interactions with chain B- Hydrophobic interactions: B:V.14
- Hydrogen bonds: B:G.9, B:T.11, B:T.11, B:G.12, B:A.13, B:V.14, B:S.37, B:S.37, B:S.40, B:S.40, B:T.76, B:N.94, B:R.99, B:P.126, B:N.127, B:C.128, B:M.162
- Water bridges: B:G.15
- 2 x NA: SODIUM ION(Non-functional Binders)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 4 residues within 4Å:- Chain A: E.24, S.25, W.332, E.339
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.24
- Water bridges: A:E.339
EDO.6: 7 residues within 4Å:- Chain A: Q.17, S.250, V.297, G.298, D.324, L.326, L.327
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.250, A:G.298
EDO.10: 4 residues within 4Å:- Chain B: E.24, S.25, W.332, E.339
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.24
- Water bridges: B:E.339, B:E.339
EDO.11: 6 residues within 4Å:- Chain B: Q.17, S.250, V.297, G.298, D.324, L.326
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.250, B:G.298
EDO.12: 6 residues within 4Å:- Chain B: E.282, P.291, Q.292, N.295, A.296, F.303
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:Q.292, B:Q.292
- Water bridges: B:N.295, B:N.295, B:N.295
EDO.13: 4 residues within 4Å:- Chain A: T.225, K.229
- Chain B: L.311, D.312
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Water bridges: B:D.312
- Hydrogen bonds: A:K.229
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pavlovsky, A.G. et al., A cautionary tale of structure-guided inhibitor development against an essential enzyme in the aspartate-biosynthetic pathway. Acta Crystallogr.,Sect.D (2014)
- Release Date
- 2014-12-10
- Peptides
- Aspartate-semialdehyde dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.51 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 3JL: 3-(3-carboxypropyl)benzene-1,2-dicarboxylic acid(Non-covalent)
- 3 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pavlovsky, A.G. et al., A cautionary tale of structure-guided inhibitor development against an essential enzyme in the aspartate-biosynthetic pathway. Acta Crystallogr.,Sect.D (2014)
- Release Date
- 2014-12-10
- Peptides
- Aspartate-semialdehyde dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B