- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.12 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x IMP: INOSINIC ACID(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 4 residues within 4Å:- Chain A: Y.164, P.165, N.166, L.167
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.164, A:N.166, A:L.167
GOL.11: 4 residues within 4Å:- Chain B: Y.164, P.165, N.166, L.167
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Y.164, B:N.166, B:L.167
GOL.19: 4 residues within 4Å:- Chain C: Y.164, P.165, N.166, L.167
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:Y.164, C:N.166, C:L.167
GOL.27: 4 residues within 4Å:- Chain D: Y.164, P.165, N.166, L.167
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:Y.164, D:N.166, D:L.167
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 3 residues within 4Å:- Chain A: S.322, R.324
- Chain C: K.307
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:S.322
- Salt bridges: C:K.307
SO4.5: 2 residues within 4Å:- Chain A: S.145, A.146
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.146
- Salt bridges: A:K.74
SO4.6: 3 residues within 4Å:- Chain A: I.78, Q.126, R.129
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.126
- Water bridges: A:I.78
- Salt bridges: A:R.129
SO4.12: 3 residues within 4Å:- Chain B: S.322, R.324
- Chain D: K.307
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain B- Salt bridges: D:K.307
- Hydrogen bonds: B:S.322
SO4.13: 2 residues within 4Å:- Chain B: S.145, A.146
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:A.146
- Salt bridges: B:K.74
SO4.14: 3 residues within 4Å:- Chain B: I.78, Q.126, R.129
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Q.126
- Water bridges: B:I.78
- Salt bridges: B:R.129
SO4.20: 3 residues within 4Å:- Chain B: K.307
- Chain C: S.322, R.324
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:S.322
- Salt bridges: B:K.307
SO4.21: 2 residues within 4Å:- Chain C: S.145, A.146
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:A.146
- Salt bridges: C:K.74
SO4.22: 3 residues within 4Å:- Chain C: I.78, Q.126, R.129
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:Q.126
- Water bridges: C:I.78
- Salt bridges: C:R.129
SO4.28: 3 residues within 4Å:- Chain A: K.307
- Chain D: S.322, R.324
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain A- Hydrogen bonds: D:S.322
- Salt bridges: A:K.307
SO4.29: 2 residues within 4Å:- Chain D: S.145, A.146
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:A.146
- Salt bridges: D:K.74
SO4.30: 3 residues within 4Å:- Chain D: I.78, Q.126, R.129
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:Q.126
- Water bridges: D:I.78
- Salt bridges: D:R.129
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.7: 3 residues within 4Å:- Chain A: R.65, S.91, K.101
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.65, A:R.65, A:K.101, A:K.101
MPD.15: 3 residues within 4Å:- Chain B: R.65, S.91, K.101
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.65, B:R.65, B:K.101, B:K.101
MPD.23: 3 residues within 4Å:- Chain C: R.65, S.91, K.101
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:R.65, C:R.65, C:K.101, C:K.101
MPD.31: 3 residues within 4Å:- Chain D: R.65, S.91, K.101
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:R.65, D:R.65, D:K.101, D:K.101
- 4 x K: POTASSIUM ION(Non-covalent)
K.8: 8 residues within 4Å:- Chain A: G.196, P.197, G.198, C.201
- Chain D: E.365, S.366, H.367, H.369
5 PLIP interactions:2 interactions with chain D, 3 interactions with chain A- Metal complexes: D:E.365, D:S.366, A:G.196, A:G.198, A:C.201
K.16: 8 residues within 4Å:- Chain B: G.196, P.197, G.198, C.201
- Chain C: E.365, S.366, H.367, H.369
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain C- Metal complexes: B:G.196, B:G.198, B:C.201, C:E.365, C:S.366
K.24: 8 residues within 4Å:- Chain A: E.365, S.366, H.367, H.369
- Chain C: G.196, P.197, G.198, C.201
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain A- Metal complexes: C:G.196, C:G.198, C:C.201, A:E.365, A:S.366
K.32: 8 residues within 4Å:- Chain B: E.365, S.366, H.367, H.369
- Chain D: G.196, P.197, G.198, C.201
5 PLIP interactions:3 interactions with chain D, 2 interactions with chain B- Metal complexes: D:G.196, D:G.198, D:C.201, B:E.365, B:S.366
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, Y. et al., Crystal Structure of Inosine 5'-monophosphate Dehydrogenase with the Internal Deletion Containing CBS Domain from Campylobacter jejuni. To be Published (2014)
- Release Date
- 2014-09-17
- Peptides
- Inosine-5'-monophosphate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.12 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x IMP: INOSINIC ACID(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 4 x K: POTASSIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, Y. et al., Crystal Structure of Inosine 5'-monophosphate Dehydrogenase with the Internal Deletion Containing CBS Domain from Campylobacter jejuni. To be Published (2014)
- Release Date
- 2014-09-17
- Peptides
- Inosine-5'-monophosphate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A