SMTL ID : 4r8u.1 (1 other biounit)

S-SAD structure of DINB-DNA Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.8, M.9, D.103, K.157 Ligands: 1FZ.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.8, A:M.9, A:D.103, A:D.103

1 x 1FZ: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine(Non-covalent)

1FZ.2: 17 residues within 4Å: Chain A: D.8, M.9, D.10, C.11, F.12, F.13, S.42, T.43, R.49, S.55, A.56, D.103, E.104, K.157 Chain B: A.3 Chain C: C.18 Ligands: MG.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.13, A:T.43 Hydrogen bonds: A:M.9, A:C.11, A:F.12, A:F.13, A:T.43, A:T.43, A:R.49, A:D.103 Water bridges: A:S.55, A:S.55 Salt bridges: A:R.49, A:K.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weinert, T. et al., Fast native-SAD phasing for routine macromolecular structure determination. Nat.Methods (2015)

Release Date

2015-01-14

Peptides

DNA polymerase IV: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase IV