SMTL ID : 4r8u.2 (1 other biounit)

S-SAD structure of DINB-DNA Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x 1FZ: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine(Non-covalent)

1FZ.1: 18 residues within 4Å: Chain A: D.7, M.8, D.9, C.10, F.11, F.12, S.41, T.42, R.48, S.54, A.55, D.102, E.103, K.156 Chain B: A.3, G.4 Chain C: C.16 Ligands: MG.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.12, A:T.42 Hydrogen bonds: A:D.9, A:C.10, A:F.11, A:F.12, A:T.42, A:T.42, A:R.48 Salt bridges: A:R.48, A:K.156

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.7, M.8, D.102 Ligands: 1FZ.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.7, A:M.8, A:D.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weinert, T. et al., Fast native-SAD phasing for routine macromolecular structure determination. Nat.Methods (2015)

Release Date

2015-01-14

Peptides

DNA polymerase IV: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DNA polymerase IV