SMTL ID : 4rb1.1

Crystal structure of Magnetospirillum gryphiswaldense MSR-1 Fur-Mn2+-E. coli Fur box

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

homo-tetramer

Ligands

8 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: H.35, E.83, H.90, H.92, E.103 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.35, A:E.83, A:H.90, A:H.92, A:E.103 MN.2: 4 residues within 4Å: Chain A: H.89, D.91, E.110, H.127 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.89, A:D.91, A:E.110, A:H.127, H2O.1 MN.3: 4 residues within 4Å: Chain B: H.89, D.91, E.110, H.127 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.89, B:D.91, B:E.110, B:H.127, H2O.1 MN.4: 5 residues within 4Å: Chain B: H.35, E.83, H.90, H.92, E.103 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.35, B:E.83, B:H.90, B:H.92, B:E.103 MN.5: 5 residues within 4Å: Chain D: H.35, E.83, H.90, H.92, E.103 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:H.35, D:E.83, D:H.90, D:H.92, D:E.103 MN.6: 4 residues within 4Å: Chain D: H.89, D.91, E.110, H.127 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.89, D:D.91, D:E.110, D:H.127, H2O.1 MN.7: 4 residues within 4Å: Chain E: H.89, D.91, E.110, H.127 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:H.89, E:D.91, E:E.110, E:H.127, H2O.1 MN.8: 5 residues within 4Å: Chain E: H.35, E.83, H.90, H.92, E.103 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:H.35, E:E.83, E:H.90, E:H.92, E:E.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deng, Z. et al., Mechanistic insights into metal ion activation and operator recognition by the ferric uptake regulator. Nat Commun

Release Date

2015-07-15

Peptides

DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport(Fur family): ABDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D
A

E
B

DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport(Fur family)

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