- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.03 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x 3QF: [2-([2-(2-AMINO-6-OXO-1,6-DIHYDRO-9H-PURIN-9-YL)ETHYL]{2-[(2-OXOETHYL)(2-PHOSPHONOETHYL)AMINO]ETHYL}AMINO)ETHYL]PHOSPHONIC ACID(Non-covalent)
3QF.1: 21 residues within 4Å:- Chain A: V.63, L.64, K.65, G.66, V.89, V.123, V.124, D.125, S.126, G.127, L.128, T.129, K.153, D.173, F.174, V.175, L.180, D.181, R.187
- Ligands: MG.2, MG.3
24 PLIP interactions:24 interactions with chain A- Hydrogen bonds: A:K.65, A:G.66, A:D.125, A:S.126, A:G.127, A:L.128, A:T.129, A:T.129, A:K.153, A:V.175, A:V.175, A:V.175, A:D.181, A:R.187, A:R.187
- Water bridges: A:A.67, A:V.89, A:D.122, A:D.122, A:V.123, A:S.126, A:S.126, A:G.127, A:L.130
3QF.4: 23 residues within 4Å:- Chain B: V.63, L.64, K.65, G.66, V.89, S.90, D.122, V.123, V.124, D.125, S.126, G.127, L.128, T.129, K.153, D.173, F.174, V.175, L.180, D.181, R.187
- Ligands: MG.5, MG.6
25 PLIP interactions:25 interactions with chain B- Hydrogen bonds: B:K.65, B:G.66, B:D.125, B:S.126, B:G.127, B:L.128, B:T.129, B:T.129, B:K.153, B:V.175, B:V.175, B:V.175, B:D.181, B:R.187, B:R.187
- Water bridges: B:K.65, B:A.67, B:V.89, B:D.122, B:S.126, B:S.126, B:S.126, B:L.130, B:G.179
- pi-Stacking: B:F.174
3QF.7: 21 residues within 4Å:- Chain C: V.63, L.64, K.65, G.66, V.89, S.90, V.123, V.124, D.125, S.126, G.127, L.128, T.129, K.153, D.173, F.174, V.175, L.180, D.181, R.187
- Ligands: MG.9
24 PLIP interactions:24 interactions with chain C- Hydrogen bonds: C:K.65, C:G.66, C:D.125, C:D.125, C:S.126, C:G.127, C:L.128, C:T.129, C:T.129, C:K.153, C:V.175, C:V.175, C:V.175, C:D.181, C:R.187, C:R.187
- Water bridges: C:A.67, C:S.91, C:D.122, C:S.126, C:G.127, C:T.129, C:L.130, C:G.179
3QF.10: 21 residues within 4Å:- Chain D: V.63, L.64, K.65, G.66, V.89, V.123, V.124, D.125, S.126, G.127, L.128, T.129, K.153, D.173, F.174, V.175, L.180, D.181, R.187
- Ligands: MG.11, MG.12
25 PLIP interactions:25 interactions with chain D- Hydrogen bonds: D:K.65, D:G.66, D:D.125, D:S.126, D:G.127, D:L.128, D:T.129, D:K.153, D:V.175, D:V.175, D:D.181, D:D.181, D:D.181, D:R.187, D:R.187
- Water bridges: D:K.65, D:K.65, D:A.67, D:V.89, D:V.123, D:S.126, D:S.126, D:L.130, D:G.179, D:D.181
- 8 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 2 residues within 4Å:- Chain A: D.181
- Ligands: 3QF.1
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:D.181, H2O.1, H2O.1, H2O.1, H2O.8
MG.3: 3 residues within 4Å:- Chain A: E.121, D.122
- Ligands: 3QF.1
6 PLIP interactions:2 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:E.121, A:D.122, H2O.1, H2O.1, H2O.1, H2O.8
MG.5: 2 residues within 4Å:- Chain B: D.181
- Ligands: 3QF.4
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:D.181, H2O.8, H2O.8, H2O.8, H2O.8
MG.6: 3 residues within 4Å:- Chain B: E.121, D.122
- Ligands: 3QF.4
6 PLIP interactions:2 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:E.121, B:D.122, H2O.8, H2O.8, H2O.8, H2O.8
MG.8: 2 residues within 4Å:- Chain C: E.121, D.122
6 PLIP interactions:2 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: C:E.121, C:D.122, H2O.12, H2O.12, H2O.12, H2O.13
MG.9: 2 residues within 4Å:- Chain C: D.181
- Ligands: 3QF.7
5 PLIP interactions:1 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: C:D.181, H2O.12, H2O.13, H2O.13, H2O.16
MG.11: 3 residues within 4Å:- Chain D: E.121, D.122
- Ligands: 3QF.10
6 PLIP interactions:2 interactions with chain D, 4 Ligand-Water interactions- Metal complexes: D:E.121, D:D.122, H2O.16, H2O.16, H2O.17, H2O.17
MG.12: 3 residues within 4Å:- Chain D: D.181, R.187
- Ligands: 3QF.10
5 PLIP interactions:1 interactions with chain D, 4 Ligand-Water interactions- Metal complexes: D:D.181, H2O.17, H2O.17, H2O.17, H2O.22
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Eng, W.S. et al., First Crystal Structures of Mycobacterium tuberculosis 6-Oxopurine Phosphoribosyltransferase: Complexes with GMP and Pyrophosphate and with Acyclic Nucleoside Phosphonates Whose Prodrugs Have Antituberculosis Activity. J.Med.Chem. (2015)
- Release Date
- 2015-05-20
- Peptides
- Hypoxanthine-guanine phosphoribosyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.03 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x 3QF: [2-([2-(2-AMINO-6-OXO-1,6-DIHYDRO-9H-PURIN-9-YL)ETHYL]{2-[(2-OXOETHYL)(2-PHOSPHONOETHYL)AMINO]ETHYL}AMINO)ETHYL]PHOSPHONIC ACID(Non-covalent)
- 8 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Eng, W.S. et al., First Crystal Structures of Mycobacterium tuberculosis 6-Oxopurine Phosphoribosyltransferase: Complexes with GMP and Pyrophosphate and with Acyclic Nucleoside Phosphonates Whose Prodrugs Have Antituberculosis Activity. J.Med.Chem. (2015)
- Release Date
- 2015-05-20
- Peptides
- Hypoxanthine-guanine phosphoribosyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D