SMTL ID : 4ri8.1 (1 other biounit)

FAN1 Nuclease bound to 5' phosphorylated p(dG)/3'(dT-dT-dT-dT) double flap DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x DG- DA- DG- DG- DC- DG- DT- DG: DNA (5'-D(P*GP*AP*GP*GP*CP*GP*TP*G)-3')(Non-covalent)

DG-DA-DG-DG-DC-DG-DT-DG.1: 26 residues within 4Å: Chain A: R.340, H.376, K.428, S.429, V.448, E.468, R.586, R.589, G.590, G.591, D.594, E.609, K.611, N.614, D.615, K.620, Q.621 Chain C: A.2, C.3, A.4, C.5, G.6, C.7, C.8, T.9 Ligands: CA.2 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:T.207, A:T.207, A:Q.351 Salt bridges: A:R.313, A:R.313, A:H.315, A:R.344, A:H.352, A:R.383, A:R.386, A:R.386

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: E.449, D.594, E.609, V.610, K.611 Ligands: DG-DA-DG-DG-DC-DG-DT-DG.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.594, A:E.609, A:V.610

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, R. et al., DNA repair. Mechanism of DNA interstrand cross-link processing by repair nuclease FAN1. Science (2014)

Release Date

2014-12-03

Peptides

Fanconi-associated nuclease 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fanconi-associated nuclease 1

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