SMTL ID : 4rj2.1

Crystal structure of E.coli purine nucleoside phosphorylase at 0.99 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 0.99 Å

Oligo State

homo-hexamer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 10 residues within 4Å: Chain A: G.20, H.62, G.63, M.64, R.87, S.90, E.179, M.180, E.181 Chain D: R.43 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:R.87, A:S.90, A:M.180, D:R.43 GOL.2: 7 residues within 4Å: Chain C: G.20, D.21, R.87, V.88, G.89, S.90 Chain E: R.43 9 PLIP interactions: 7 interactions with chain C, 2 interactions with chain E Hydrogen bonds: C:G.20, C:D.21, C:R.87, C:R.87, C:S.90, C:S.90, E:R.43, E:R.43 Water bridges: C:V.88 GOL.3: 8 residues within 4Å: Chain A: R.43 Chain D: G.20, D.21, R.87, V.88, G.89, S.90 Ligands: GOL.5 9 PLIP interactions: 7 interactions with chain D, 2 interactions with chain A Hydrogen bonds: D:G.20, D:D.21, D:R.87, D:R.87, D:V.88, D:S.90, D:S.90, A:R.43, A:R.43 GOL.4: 5 residues within 4Å: Chain D: R.101, V.103, I.146, T.220, D.223 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:T.220 Water bridges: D:R.101, D:D.102, D:D.102, D:D.147, D:D.147, D:T.219 GOL.5: 10 residues within 4Å: Chain A: R.43 Chain D: G.20, H.62, G.63, M.64, R.87, E.179, M.180, E.181 Ligands: GOL.3 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:R.87, D:S.90, D:M.180, A:R.43 GOL.6: 11 residues within 4Å: Chain B: R.43 Chain F: P.19, G.20, R.24, H.62, G.63, R.87, V.88, G.89, S.90, E.181 9 PLIP interactions: 8 interactions with chain F, 1 interactions with chain B Hydrogen bonds: F:G.20, F:G.63, F:R.87, F:R.87, F:V.88, F:S.90, B:R.43 Water bridges: F:S.90, F:E.181

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Timofeev, V.I. et al., Crystal structure of E.coli purine nucleoside phosphorylase at 0.99 A resolution. To be Published

Release Date

2014-12-03

Peptides

Purine nucleoside phosphorylase DeoD-type: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Purine nucleoside phosphorylase DeoD-type

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