SMTL ID : 4rkg.1

Structure of the MSL2 CXC domain bound with a non-specific (GC)6 DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

9 x ZN: ZINC ION(Non-covalent)(Non-functional Binders)

ZN.1: 6 residues within 4Å: Chain A: C.7, C.9, C.21, C.26 Ligands: ZN.2, ZN.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.7, A:C.9, A:C.21, A:C.26 ZN.2: 7 residues within 4Å: Chain A: C.7, C.21, C.35, C.40, C.43 Ligands: ZN.1, ZN.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.21, A:C.35, A:C.40, A:C.43 ZN.3: 6 residues within 4Å: Chain A: C.7, C.28, C.35, C.38 Ligands: ZN.1, ZN.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.7, A:C.28, A:C.35, A:C.38 ZN.4: 6 residues within 4Å: Chain B: C.7, C.9, C.21, C.26 Ligands: ZN.5, ZN.6 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.7, B:C.9, B:C.21, B:C.26 ZN.5: 7 residues within 4Å: Chain B: C.7, C.21, C.35, C.40, C.43 Ligands: ZN.4, ZN.6 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.21, B:C.35, B:C.40, B:C.43 ZN.6: 6 residues within 4Å: Chain B: C.7, C.28, C.35, C.38 Ligands: ZN.4, ZN.5 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.7, B:C.28, B:C.35, B:C.38 ZN.7: 1 residues within 4Å: Ligands: ZN.9 No protein-ligand interaction detected (PLIP) ZN.8: 1 residues within 4Å: Ligands: ZN.9 No protein-ligand interaction detected (PLIP) ZN.9: 2 residues within 4Å: Ligands: ZN.7, ZN.8 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zheng, S. et al., Structural basis of X chromosome DNA recognition by the MSL2 CXC domain during Drosophila dosage compensation. Genes Dev. (2014)

Release Date

2015-01-21

Peptides

E3 ubiquitin-protein ligase msl-2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E3 ubiquitin-protein ligase msl-2

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