SMTL ID : 4rnd.1

Crystal Structure of the subunit DF-assembly of the eukaryotic V-ATPase.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.18 Å

Oligo State

hetero-2-2-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: V.87, S.88, T.89, N.118, F.120 Chain B: L.21, G.24, I.25, G.26 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.88, A:S.88, A:T.89, A:N.118, B:G.26, B:G.26 GOL.2: 3 residues within 4Å: Chain B: E.34, K.53, H.56 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.34, B:H.56 Water bridges: B:K.35 GOL.3: 3 residues within 4Å: Chain C: R.180, N.183, T.184 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.183

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Balakrishna, A.M. et al., Crystal Structure of Subunits D and F in Complex Gives Insight into Energy Transmission of the Eukaryotic V-ATPase from Saccharomyces cerevisiae. J.Biol.Chem. (2015)

Release Date

2014-12-10

Peptides

V-type proton ATPase subunit D: AC
V-type proton ATPase subunit F: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

V-type proton ATPase subunit D

V-type proton ATPase subunit F

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