SMTL ID : 7tmm.1

Complete V1 Complex from Saccharomyces cerevisiae

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-3-1-1-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: A.258, F.259, G.260, C.261, G.262, K.263, T.264, V.265, R.287, F.452, Q.529, N.530, G.531, Y.532 Chain B: S.380, R.381, K.384 18 PLIP interactions: 15 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Q.238, A:G.260, A:C.261, A:G.262, A:K.263, A:T.264, A:T.264, A:T.264, A:V.265, A:R.287, A:Q.529, A:G.531, B:R.381 Salt bridges: A:K.263, A:K.263, A:R.287, B:R.381, B:R.381

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vasanthakumar, T. et al., Coordinated conformational changes in the V 1 complex during V-ATPase reversible dissociation. Nat.Struct.Mol.Biol. (2022)

Release Date

2022-04-06

Peptides

H(+)-transporting two-sector ATPase: ACE
Vacuolar proton pump subunit B: BDF
V-ATPase subunit E: GIK
V-type proton ATPase subunit G: HJL
V-type proton ATPase subunit D: M
V-type proton ATPase subunit F: N
V-type proton ATPase subunit C: O
V-type proton ATPase subunit H: P

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

G
G

I
I

K
K

H
H

J
J

L
L

M
M

N
N

O
O

P
P

H(+)-transporting two-sector ATPase

Vacuolar proton pump subunit B

V-ATPase subunit E

V-type proton ATPase subunit G

V-type proton ATPase subunit D

V-type proton ATPase subunit F

V-type proton ATPase subunit C

V-type proton ATPase subunit H

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