SMTL ID : 4rqt.1

Alcohol Dehydrogenase Crystal Structure

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 8 residues within 4Å: Chain A: C.95, G.96, E.97, C.98, C.101, C.109, D.110, L.111 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.95, A:C.98, A:C.101, A:C.109 ZN.2: 5 residues within 4Å: Chain A: C.43, T.45, H.65, C.173 Ligands: ACY.6 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:C.43, A:H.65, A:C.173, ACY.6 ZN.7: 8 residues within 4Å: Chain B: C.95, G.96, E.97, C.98, C.101, C.109, D.110, L.111 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.95, B:C.98, B:C.101, B:C.109 ZN.8: 5 residues within 4Å: Chain B: C.43, T.45, H.65, C.173 Ligands: ACY.12 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Ligand interactions Metal complexes: B:C.43, B:H.65, B:C.173, ACY.12

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 7 residues within 4Å: Chain A: C.43, H.44, G.200, A.201, V.202, M.361, R.368 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.44, A:A.201 Water bridges: A:R.368 Salt bridges: A:H.44, A:R.368 SO4.4: 4 residues within 4Å: Chain A: H.245, D.246, K.247, V.252 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.246, A:K.247 Salt bridges: A:H.245, A:K.247 SO4.5: 5 residues within 4Å: Chain A: S.270, V.271, Q.272, A.273, K.296 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.270, A:V.271, A:Q.272 Water bridges: A:G.269, A:K.296 Salt bridges: A:K.296 SO4.9: 7 residues within 4Å: Chain B: C.43, H.44, G.200, A.201, V.202, M.361, R.368 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:H.44, B:A.201 Water bridges: B:R.368 Salt bridges: B:H.44, B:R.368 SO4.10: 4 residues within 4Å: Chain B: H.245, D.246, K.247, V.252 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.246, B:D.246, B:K.247 Salt bridges: B:H.245, B:K.247 SO4.11: 5 residues within 4Å: Chain B: S.270, V.271, Q.272, A.273, K.296 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.270, B:V.271, B:Q.272, B:D.298 Water bridges: B:G.269, B:K.296 Salt bridges: B:K.296

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.6: 8 residues within 4Å: Chain A: C.43, T.45, H.65, F.91, I.114, L.140, C.173 Ligands: ZN.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.91 Water bridges: A:H.44, A:T.177 Salt bridges: A:H.44, A:H.65 ACY.12: 8 residues within 4Å: Chain B: C.43, T.45, H.65, F.91, I.114, L.140, C.173 Ligands: ZN.8 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.91 Water bridges: B:H.44, B:T.177 Salt bridges: B:H.44, B:H.65

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Chen, F. et al., Structural insight into the conformational change of alcohol dehydrogenase from arabidopsis Thalianal during coenzyme binding. Biochimie (2014)

Release Date

2014-12-17

Peptides

Alcohol dehydrogenase class-P: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Alcohol dehydrogenase class-P

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