SMTL ID : 4rqt.1

Alcohol Dehydrogenase Crystal Structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 8 residues within 4Å: Chain A: C.95, G.96, E.97, C.98, C.101, C.109, D.110, L.111 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.95, A:C.98, A:C.101, A:C.109 ZN.2: 5 residues within 4Å: Chain A: C.43, T.45, H.65, C.173 Ligands: ACY.6 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:C.43, A:H.65, A:C.173, ACY.6 ZN.7: 8 residues within 4Å: Chain B: C.95, G.96, E.97, C.98, C.101, C.109, D.110, L.111 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.95, B:C.98, B:C.101, B:C.109 ZN.8: 5 residues within 4Å: Chain B: C.43, T.45, H.65, C.173 Ligands: ACY.12 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Ligand interactions Metal complexes: B:C.43, B:H.65, B:C.173, ACY.12

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 7 residues within 4Å: Chain A: C.43, H.44, G.200, A.201, V.202, M.361, R.368 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.44, A:A.201 Water bridges: A:R.368 Salt bridges: A:H.44, A:R.368 SO4.4: 4 residues within 4Å: Chain A: H.245, D.246, K.247, V.252 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.246, A:K.247 Salt bridges: A:H.245, A:K.247 SO4.5: 5 residues within 4Å: Chain A: S.270, V.271, Q.272, A.273, K.296 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.270, A:V.271, A:Q.272 Water bridges: A:G.269, A:K.296 Salt bridges: A:K.296 SO4.9: 7 residues within 4Å: Chain B: C.43, H.44, G.200, A.201, V.202, M.361, R.368 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:H.44, B:A.201 Water bridges: B:R.368 Salt bridges: B:H.44, B:R.368 SO4.10: 4 residues within 4Å: Chain B: H.245, D.246, K.247, V.252 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.246, B:D.246, B:K.247 Salt bridges: B:H.245, B:K.247 SO4.11: 5 residues within 4Å: Chain B: S.270, V.271, Q.272, A.273, K.296 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.270, B:V.271, B:Q.272, B:D.298 Water bridges: B:G.269, B:K.296 Salt bridges: B:K.296

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.6: 8 residues within 4Å: Chain A: C.43, T.45, H.65, F.91, I.114, L.140, C.173 Ligands: ZN.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.91 Water bridges: A:H.44, A:T.177 Salt bridges: A:H.44, A:H.65 ACY.12: 8 residues within 4Å: Chain B: C.43, T.45, H.65, F.91, I.114, L.140, C.173 Ligands: ZN.8 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.91 Water bridges: B:H.44, B:T.177 Salt bridges: B:H.44, B:H.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, F. et al., Structural insight into the conformational change of alcohol dehydrogenase from arabidopsis Thalianal during coenzyme binding. Biochimie (2014)

Release Date

2014-12-17

Peptides

Alcohol dehydrogenase class-P: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Alcohol dehydrogenase class-P

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