SMTL ID : 4rqu.1

Alcohol Dehydrogenase crystal structure in complex with NAD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 9 residues within 4Å: Chain A: E.94, C.95, G.96, E.97, C.98, C.101, C.109, D.110, L.111 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.95, A:C.98, A:C.101, A:C.109 ZN.2: 7 residues within 4Å: Chain A: C.43, T.45, H.65, E.66, C.173, G.174, R.368 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.43, A:H.65, A:C.173 ZN.3: 8 residues within 4Å: Chain B: C.95, G.96, E.97, C.98, C.101, C.109, D.110, L.111 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.95, B:C.98, B:C.101, B:C.109 ZN.4: 5 residues within 4Å: Chain B: C.43, T.45, H.65, C.173 Ligands: NAD.5 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.43, B:H.65, B:C.173, H2O.2

1 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.5: 35 residues within 4Å: Chain A: L.308 Chain B: C.43, H.44, T.45, F.91, C.173, G.174, T.177, F.197, G.198, L.199, G.200, A.201, V.202, G.203, V.221, D.222, F.223, N.224, R.227, P.242, C.267, T.268, G.269, S.270, A.273, V.291, G.292, V.293, T.316, F.317, F.318, M.361, R.368 Ligands: ZN.4 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:T.177, B:V.202 Hydrogen bonds: B:H.44, B:T.45, B:G.200, B:A.201, B:V.202, B:D.222, B:F.223, B:R.227, B:S.270, B:S.270, B:V.291, B:V.293, B:F.318 Salt bridges: B:H.44, B:R.227, B:R.368

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, F. et al., Structural insight into the conformational change of alcohol dehydrogenase from arabidopsis Thalianal during coenzyme binding. Biochimie (2014)

Release Date

2014-12-17

Peptides

Alcohol Dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alcohol Dehydrogenase

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