SMTL ID : 4rzg.1

Crystal Structure Analysis of the DNPA-bounded NUR77 Ligand binding Domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: H.22, L.23, S.25, G.26, P.27, R.100, R.104 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.100, A:R.104 Water bridges: A:P.27 GOL.2: 4 residues within 4Å: Chain B: L.159, V.160, T.163, Q.178 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.163, B:T.163, B:Q.178 GOL.3: 7 residues within 4Å: Chain B: H.22, L.23, S.25, G.26, P.27, R.100, R.104 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.100, B:R.104, B:R.104

1 x ZHN: pentyl (3,5-dihydroxy-2-nonanoylphenyl)acetate(Non-covalent)

ZHN.4: 10 residues within 4Å: Chain B: L.87, E.90, S.91, A.92, F.93, L.94, R.165, I.241, D.244, T.245 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:L.87, B:F.93, B:L.94, B:I.241, B:D.244 Hydrogen bonds: B:S.91, B:H.166, B:I.241, B:D.244 Salt bridges: B:R.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, L. et al., Impeding the interaction between Nur77 and p38 reduces LPS-induced inflammation. Nat.Chem.Biol. (2015)

Release Date

2015-03-18

Peptides

Nuclear receptor subfamily 4 group A member 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Nuclear receptor subfamily 4 group A member 1

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