- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.33 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x LSD: Lasalocid A(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 9 residues within 4Å:- Chain A: H.149, I.153, D.173, H.189, E.200, Y.254, M.256, M.269, A.271
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.200, A:Y.254
GOL.8: 9 residues within 4Å:- Chain B: H.149, I.153, D.173, H.189, E.200, Y.254, M.256, M.269, A.271
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.173, B:E.200
GOL.18: 9 residues within 4Å:- Chain C: H.149, I.153, D.173, H.189, E.200, Y.254, M.256, M.269, A.271
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:E.200, C:Y.254
GOL.24: 9 residues within 4Å:- Chain D: H.149, I.153, D.173, H.189, E.200, Y.254, M.256, M.269, A.271
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:D.173, D:E.200
- 16 x FMT: FORMIC ACID(Non-functional Binders)
FMT.3: 2 residues within 4Å:- Chain A: E.68, L.84
Ligand excluded by PLIPFMT.4: 3 residues within 4Å:- Chain A: Y.17, D.41, E.68
Ligand excluded by PLIPFMT.5: 2 residues within 4Å:- Chain A: D.41, W.124
Ligand excluded by PLIPFMT.9: 6 residues within 4Å:- Chain B: T.201, A.202, G.203, T.217, V.218, S.219
Ligand excluded by PLIPFMT.10: 4 residues within 4Å:- Chain B: H.3, P.5, E.113, G.115
Ligand excluded by PLIPFMT.11: 2 residues within 4Å:- Chain B: E.68, L.84
Ligand excluded by PLIPFMT.12: 4 residues within 4Å:- Chain B: H.235, A.275
- Chain C: H.77
- Ligands: NA.14
Ligand excluded by PLIPFMT.13: 4 residues within 4Å:- Chain B: H.77
- Chain C: H.235, A.275
- Ligands: NA.14
Ligand excluded by PLIPFMT.19: 2 residues within 4Å:- Chain C: E.68, L.84
Ligand excluded by PLIPFMT.20: 3 residues within 4Å:- Chain C: Y.17, D.41, E.68
Ligand excluded by PLIPFMT.21: 2 residues within 4Å:- Chain C: D.41, W.124
Ligand excluded by PLIPFMT.25: 6 residues within 4Å:- Chain D: T.201, A.202, G.203, T.217, V.218, S.219
Ligand excluded by PLIPFMT.26: 4 residues within 4Å:- Chain D: H.3, P.5, E.113, G.115
Ligand excluded by PLIPFMT.27: 2 residues within 4Å:- Chain D: E.68, L.84
Ligand excluded by PLIPFMT.28: 4 residues within 4Å:- Chain A: H.77
- Chain D: H.235, A.275
- Ligands: NA.30
Ligand excluded by PLIPFMT.29: 4 residues within 4Å:- Chain A: H.235, A.275
- Chain D: H.77
- Ligands: NA.30
Ligand excluded by PLIP- 6 x NA: SODIUM ION(Non-functional Binders)
NA.6: 4 residues within 4Å:- Chain A: V.126, T.127, S.129, T.132
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.129, A:S.129
NA.14: 4 residues within 4Å:- Chain B: H.235
- Chain C: H.235
- Ligands: FMT.12, FMT.13
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:H.235
NA.15: 4 residues within 4Å:- Chain B: V.126, T.127, S.129, T.132
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:V.126, B:S.129
NA.22: 4 residues within 4Å:- Chain C: V.126, T.127, S.129, T.132
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:S.129, C:S.129
NA.30: 4 residues within 4Å:- Chain A: H.235
- Chain D: H.235
- Ligands: FMT.28, FMT.29
No protein-ligand interaction detected (PLIP)NA.31: 4 residues within 4Å:- Chain D: V.126, T.127, S.129, T.132
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:S.129, D:S.129
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wong, F.T. et al., Epoxide hydrolase-lasalocid a structure provides mechanistic insight into polyether natural product biosynthesis. J.Am.Chem.Soc. (2015)
- Release Date
- 2015-01-21
- Peptides
- Epoxide hydrolase LasB: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.33 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x LSD: Lasalocid A(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 16 x FMT: FORMIC ACID(Non-functional Binders)
- 6 x NA: SODIUM ION(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wong, F.T. et al., Epoxide hydrolase-lasalocid a structure provides mechanistic insight into polyether natural product biosynthesis. J.Am.Chem.Soc. (2015)
- Release Date
- 2015-01-21
- Peptides
- Epoxide hydrolase LasB: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B