SMTL ID : 4s14.1 (1 other biounit)

Crystal structure of the orphan nuclear receptor RORgamma ligand-binding domain in complex with 4alpha-caboxyl, 4beta-methyl-zymosterol (4ACD8)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.54 Å

Oligo State

hetero-6-6-mer

Ligands

6 x 4D8: (3beta,4alpha,5beta,14beta)-3-hydroxy-4-methylcholesta-8,24-diene-4-carboxylic acid(Non-covalent)

4D8.1: 16 residues within 4Å: Chain A: Q.27, L.28, W.58, C.61, H.64, L.65, A.68, M.106, A.109, V.117, F.118, F.119, F.129, I.138, I.141, H.220 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.58, A:H.64, A:L.65, A:L.65, A:A.109, A:V.117, A:F.119, A:F.129, A:I.141 Hydrogen bonds: A:Q.27, A:Q.27 4D8.2: 16 residues within 4Å: Chain C: Q.27, L.28, W.58, C.61, H.64, L.65, A.68, M.106, A.109, V.117, F.118, F.119, F.129, I.138, I.141, H.220 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:W.58, C:H.64, C:L.65, C:L.65, C:A.109, C:V.117, C:F.119, C:F.129, C:I.141 Hydrogen bonds: C:Q.27, C:Q.27 4D8.3: 16 residues within 4Å: Chain E: Q.27, L.28, W.58, C.61, H.64, L.65, A.68, M.106, A.109, V.117, F.118, F.119, F.129, I.138, I.141, H.220 11 PLIP interactions: 11 interactions with chain E Hydrophobic interactions: E:W.58, E:H.64, E:L.65, E:L.65, E:A.109, E:V.117, E:F.119, E:F.129, E:I.141 Hydrogen bonds: E:Q.27, E:Q.27 4D8.4: 16 residues within 4Å: Chain G: Q.27, L.28, W.58, C.61, H.64, L.65, A.68, M.106, A.109, V.117, F.118, F.119, F.129, I.138, I.141, H.220 11 PLIP interactions: 11 interactions with chain G Hydrophobic interactions: G:W.58, G:H.64, G:L.65, G:L.65, G:A.109, G:V.117, G:F.119, G:F.129, G:I.141 Hydrogen bonds: G:Q.27, G:Q.27 4D8.5: 16 residues within 4Å: Chain I: Q.27, L.28, W.58, C.61, H.64, L.65, A.68, M.106, A.109, V.117, F.118, F.119, F.129, I.138, I.141, H.220 11 PLIP interactions: 11 interactions with chain I Hydrophobic interactions: I:W.58, I:H.64, I:L.65, I:L.65, I:A.109, I:V.117, I:F.119, I:F.129, I:I.141 Hydrogen bonds: I:Q.27, I:Q.27 4D8.6: 16 residues within 4Å: Chain K: Q.27, L.28, W.58, C.61, H.64, L.65, A.68, M.106, A.109, V.117, F.118, F.119, F.129, I.138, I.141, H.220 11 PLIP interactions: 11 interactions with chain K Hydrophobic interactions: K:W.58, K:H.64, K:L.65, K:L.65, K:A.109, K:V.117, K:F.119, K:F.129, K:I.141 Hydrogen bonds: K:Q.27, K:Q.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Santori, F.R. et al., Identification of Natural ROR gamma Ligands that Regulate the Development of Lymphoid Cells. Cell Metab (2015)

Release Date

2015-02-11

Peptides

Nuclear receptor ROR-gamma: ACEGIK
Nuclear receptor-interacting protein 1: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

G
A

I
A

K
A

B
C

D
C

F
C

H
C

J
C

L
C

Nuclear receptor ROR-gamma

Nuclear receptor-interacting protein 1

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