SMTL ID : 4s15.2 (1 other biounit)

Crystal structure of the orphan nuclear receptor RORalpha ligand-binding domain in complex with 4alpha-caboxyl, 4beta-methyl-zymosterol (4ACD8)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 4D8: (3beta,4alpha,5beta,14beta)-3-hydroxy-4-methylcholesta-8,24-diene-4-carboxylic acid(Non-covalent)

4D8.1: 17 residues within 4Å: Chain A: Q.22, Y.23, W.53, K.59, I.60, A.63, V.97, R.100, M.101, V.112, Y.113, F.124, L.127, F.132, I.133, V.136 Ligands: GOL.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.23, A:W.53, A:K.59, A:I.60, A:V.97, A:M.101, A:V.112, A:F.124, A:F.124, A:L.127, A:I.133, A:V.136 Hydrogen bonds: A:Q.22 Water bridges: A:A.63

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: C.21, Q.22, Y.23, R.100, R.103 Ligands: 4D8.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.20, A:Q.22, A:Q.22, A:Y.23, A:Y.23, A:R.100, A:R.100, A:R.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Santori, F.R. et al., Identification of Natural ROR gamma Ligands that Regulate the Development of Lymphoid Cells. Cell Metab (2015)

Release Date

2015-02-11

Peptides

Nuclear receptor ROR-alpha: A
Nuclear receptor-interacting protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Nuclear receptor ROR-alpha

Nuclear receptor-interacting protein 1

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