SMTL ID : 4s2e.1

Phosphate ion bound Crystal structure of thymidylate kinase (aq_969) from Aquifex Aeolicus VF5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: D.9, G.10, S.11, G.12, K.13, T.14, T.15 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:I.8, A:G.10, A:G.12, A:K.13, A:T.14, A:T.15 Salt bridges: A:K.13 PO4.2: 8 residues within 4Å: Chain B: I.8, D.9, G.10, S.11, G.12, K.13, T.14, T.15 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:D.9, B:G.10, B:S.11, B:G.12, B:K.13, B:T.14, B:T.15 Salt bridges: B:K.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Biswas, A. et al., Structural studies of a hyperthermophilic thymidylate kinase enzyme reveal conformational substates along the reaction coordinate. Febs J. (2017)

Release Date

2016-01-20

Peptides

Thymidylate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Thymidylate kinase

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