SMTL ID : 5h5b.1

Citrate ion bound crystal structure of thymidylate kinase (aq_969) from Aquifex Aeolicus VF5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x FLC: CITRATE ANION(Non-covalent)

FLC.1: 8 residues within 4Å: Chain A: D.9, G.10, S.11, G.12, K.13, T.14, T.15, R.145 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.10, A:G.12, A:K.13, A:T.14, A:T.14, A:T.14, A:T.15, A:T.15 Salt bridges: A:K.13, A:K.13, A:R.145 FLC.2: 8 residues within 4Å: Chain B: D.9, G.10, S.11, G.12, K.13, T.14, T.15, R.145 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.10, B:G.12, B:K.13, B:T.14, B:T.14, B:T.15 Salt bridges: B:K.13, B:R.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Biswas, A. et al., Structural studies of a hyperthermophilic thymidylate kinase enzyme reveal conformational substates along the reaction coordinate. FEBS J. (2017)

Release Date

2017-06-28

Peptides

Thymidylate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Thymidylate kinase

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