SMTL ID : 4s2w.1 (1 other biounit)

Structure of E. coli RppH bound to sulfate ions

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: S.1, G.39, G.40, R.53 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.1, A:S.1, A:G.40 Water bridges: A:Q.38, A:R.53, A:R.53, A:R.53, A:E.54, A:E.54 Salt bridges: A:R.53 SO4.2: 7 residues within 4Å: Chain A: R.28, Q.38, Y.78, L.80, Q.96, F.140, K.141 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.96 Water bridges: A:R.28 Salt bridges: A:R.28, A:K.141 SO4.3: 1 residues within 4Å: Chain A: R.19 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.19 SO4.4: 3 residues within 4Å: Chain A: R.142, D.143, R.146 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.146 SO4.5: 3 residues within 4Å: Chain A: Q.31, H.32, S.33 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.31, A:H.32 SO4.6: 4 residues within 4Å: Chain A: W.75, L.76, R.77, R.147 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.77 Salt bridges: A:R.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vasilyev, N. et al., Structures of RNA Complexes with the Escherichia coli RNA Pyrophosphohydrolase RppH Unveil the Basis for Specific 5'-End-dependent mRNA Decay. J.Biol.Chem. (2015)

Release Date

2015-02-11

Peptides

RNA pyrophosphohydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA pyrophosphohydrolase

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