SMTL ID : 6vcp.1

Crystal structure of E.coli RppH in complex with UTP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x UTP: URIDINE 5'-TRIPHOSPHATE(Non-covalent)

UTP.1: 12 residues within 4Å: Chain A: R.9, N.11, R.28, S.33, Q.38, Y.78, L.80, L.84, Q.96, V.138, F.140, K.141 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:V.138 Hydrogen bonds: A:R.28, A:S.33, A:S.33, A:Q.38, A:Q.38, A:Y.78, A:Q.96 Water bridges: A:R.28, A:R.28, A:R.28, A:V.138, A:K.141, A:K.141 Salt bridges: A:R.9, A:R.28, A:R.28, A:K.141 UTP.2: 5 residues within 4Å: Chain A: H.32, W.34, R.126, Y.132, Q.136 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.32, A:Q.136 Water bridges: A:R.27, A:R.126, A:Y.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gao, A. et al., Principles of RNA and nucleotide discrimination by the RNA processing enzyme RppH. Nucleic Acids Res. (2020)

Release Date

2020-02-05

Peptides

RNA pyrophosphohydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA pyrophosphohydrolase

Related Entries With Identical Sequence