SMTL ID : 4tsq.3 (5 other biounits)

Crystal structure of FraC with DHPC bound (crystal form III)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x HXG: 1,2-dihexanoyl-sn-glycero-3-phosphocholine(Non-covalent)

HXG.1: 7 residues within 4Å: Chain A: W.112, Y.113, S.114, W.116, Y.137, Y.138, P.142 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.112, A:Y.113 Hydrogen bonds: A:S.114, A:Y.137 Water bridges: A:R.144, A:R.144 pi-Cation interactions: A:W.116 HXG.2: 14 residues within 4Å: Chain A: R.53, S.54, A.83, T.84, G.85, V.87, S.105, P.107, Y.108, Y.113, Y.133, Y.137, Y.138 Ligands: PC.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.54, A:G.85, A:Y.108 Water bridges: A:D.109 Salt bridges: A:R.53 pi-Cation interactions: A:Y.113

1 x PC: PHOSPHOCHOLINE(Non-covalent)

PC.3: 6 residues within 4Å: Chain A: R.53, Q.130, Y.133, E.134, Y.138 Ligands: HXG.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.130 Salt bridges: A:R.53, A:E.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanaka, K. et al., Structural basis for self-assembly of a cytolytic pore lined by protein and lipid. Nat Commun (2015)

Release Date

2015-03-04

Peptides

Fragaceatoxin C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Fragaceatoxin C

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