SMTL ID : 4tsq.6 (5 other biounits)

Crystal structure of FraC with DHPC bound (crystal form III)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x HXG: 1,2-dihexanoyl-sn-glycero-3-phosphocholine(Non-covalent)

HXG.1: 7 residues within 4Å: Chain A: W.112, Y.113, S.114, W.116, Y.137, Y.138, P.142 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.112 Hydrogen bonds: A:S.114, A:Y.137 pi-Cation interactions: A:W.116

2 x PC: PHOSPHOCHOLINE(Non-covalent)

PC.2: 12 residues within 4Å: Chain A: S.54, T.84, G.85, V.87, S.105, P.107, Y.108, Y.113, Y.133, Y.137, Y.138 Ligands: PC.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.54, A:G.85, A:Y.108 Water bridges: A:D.109 pi-Cation interactions: A:Y.113 PC.3: 6 residues within 4Å: Chain A: R.53, Y.113, Q.130, Y.133, Y.138 Ligands: PC.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.130 Salt bridges: A:R.53

1 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.4: 2 residues within 4Å: Chain A: F.16, D.17 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanaka, K. et al., Structural basis for self-assembly of a cytolytic pore lined by protein and lipid. Nat Commun (2015)

Release Date

2015-03-04

Peptides

Fragaceatoxin C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

Fragaceatoxin C

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