SMTL ID : 4tv1.1

Crystal structure of hERa-LBD (Y537S) in complex with propylparaben

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 36M: propyl 4-hydroxybenzoate(Non-covalent)

36M.1: 8 residues within 4Å: Chain A: M.42, L.45, A.49, E.52, L.86, R.93, F.103, L.224 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.49, A:L.86, A:L.224 Hydrogen bonds: A:L.86, A:R.93 Water bridges: A:R.93 pi-Stacking: A:F.103 36M.8: 8 residues within 4Å: Chain B: L.45, A.49, E.52, L.86, L.90, R.93, F.103, L.224 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:A.49, B:L.86, B:L.90, B:L.224 Hydrogen bonds: B:L.86, B:R.93 Water bridges: B:R.93 pi-Stacking: B:F.103

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: Y.30, N.106, L.107, L.108, L.109, Q.113 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.30, A:N.106, A:L.108, A:Q.113, A:Q.113 Water bridges: A:D.110 GOL.3: 4 residues within 4Å: Chain A: L.19, E.22, W.92, G.141 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.92 GOL.7: 5 residues within 4Å: Chain A: K.228, N.231, V.233, P.234, L.235 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:M.227, A:N.231, A:L.235, A:L.235 Water bridges: A:N.231 GOL.9: 5 residues within 4Å: Chain B: L.19, E.22, W.92, G.141 Ligands: GOL.10 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.22 GOL.10: 9 residues within 4Å: Chain B: E.22, P.23, I.25, G.89, W.92, R.93, F.144, K.148 Ligands: GOL.9 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:E.22, B:K.148 Water bridges: B:G.89, B:R.93, B:R.93, B:K.148

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: E.118, G.119, M.120, V.121, E.122 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.119, A:V.121, A:E.122 Water bridges: A:M.120, A:M.120 EDO.5: 6 residues within 4Å: Chain A: M.221, E.222, Y.225, H.246, R.247 Chain B: E.222 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.218

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 9 residues within 4Å: Chain A: M.137, N.138, Q.140, E.143, L.188, M.189, A.192, L.194, R.202 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.138 PEG.11: 6 residues within 4Å: Chain B: N.138, Q.140, E.143, L.188, A.192, R.202 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Delfosse, V. et al., A structural perspective on nuclear receptors as targets of environmental compounds. Acta Pharmacol.Sin. (2015)

Release Date

2015-01-28

Peptides

Estrogen receptor: AB
Nuclear receptor coactivator 1: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Estrogen receptor

Nuclear receptor coactivator 1

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