SMTL ID : 4tyo.1 (1 other biounit)

PPIase in complex with a non-phosphate small molecule inhibitor.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x 39X: 3-(6-fluoro-1H-benzimidazol-2-yl)-N-(naphthalen-2-ylcarbonyl)-D-alanine(Non-covalent)

39X.1: 16 residues within 4Å: Chain A: H.19, L.21, K.23, R.29, D.72, C.73, S.74, S.75, D.81, L.82, M.90, Q.91, F.94, T.112, S.114, H.117 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.21, A:L.82, A:F.94 Hydrogen bonds: A:S.74, A:S.114, A:S.114 Water bridges: A:K.23 Salt bridges: A:K.23 pi-Stacking: A:H.117

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: T.39, E.44 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, C. et al., Structure-based design of novel human Pin1 inhibitors (III): Optimizing affinity beyond the phosphate recognition pocket. Bioorg.Med.Chem.Lett. (2014)

Release Date

2014-08-20

Peptides

Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1

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