SMTL ID : 4tyo.2 (1 other biounit)

PPIase in complex with a non-phosphate small molecule inhibitor.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x 39X: 3-(6-fluoro-1H-benzimidazol-2-yl)-N-(naphthalen-2-ylcarbonyl)-D-alanine(Non-covalent)

39X.1: 15 residues within 4Å: Chain A: H.19, L.21, K.23, R.29, C.73, S.74, S.75, D.81, L.82, M.90, Q.91, F.94, S.114, H.117 Ligands: GOL.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.21, A:L.82, A:F.94 Hydrogen bonds: A:S.74, A:S.114, A:S.114 Water bridges: A:K.23, A:S.74, A:S.74 Salt bridges: A:K.23, A:R.29 pi-Stacking: A:H.117 pi-Cation interactions: A:H.117

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: Q.89, M.90, Q.91 Ligands: 39X.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, C. et al., Structure-based design of novel human Pin1 inhibitors (III): Optimizing affinity beyond the phosphate recognition pocket. Bioorg.Med.Chem.Lett. (2014)

Release Date

2014-08-20

Peptides

Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1

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