SMTL ID : 4u07.1

ATP bound to eukaryotic FIC domain containing protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: D.266 Ligands: ATP.2 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.266, H2O.1 MG.4: 2 residues within 4Å: Chain B: D.266 Ligands: ATP.5 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.266

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 20 residues within 4Å: Chain A: T.129, I.132, E.133, V.215, H.218, H.255, V.259, H.262, D.266, G.267, N.268, G.269, R.270, R.273, Y.298, Y.299, L.302, E.303, N.306 Ligands: MG.1 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:G.267, A:N.268, A:N.268, A:G.269, A:R.270, A:R.273, A:Y.298, A:Y.298, A:N.306 Water bridges: A:H.217, A:Y.299, A:E.303 Salt bridges: A:H.262, A:R.270, A:R.273 pi-Stacking: A:Y.299 ATP.5: 19 residues within 4Å: Chain B: T.129, I.132, E.133, V.215, H.218, H.255, V.259, H.262, D.266, G.267, N.268, G.269, R.270, R.273, Y.298, Y.299, L.302, N.306 Ligands: MG.4 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:I.132, B:G.267, B:N.268, B:N.268, B:G.269, B:R.270, B:R.273, B:Y.298, B:Y.298, B:Y.299, B:N.306, B:N.306 Salt bridges: B:H.262, B:R.270, B:R.273, B:R.273 pi-Stacking: B:Y.299

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 4 residues within 4Å: Chain A: W.236, L.253, Y.256, K.257 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.257 PG4.6: 4 residues within 4Å: Chain B: L.253, Y.256, K.257, Y.260 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.257

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bunney, T.D. et al., Crystal structure of the human, FIC-domain containing protein HYPE and implications for its functions. Structure (2014)

Release Date

2014-12-10

Peptides

Adenosine monophosphate-protein transferase FICD: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Adenosine monophosphate-protein transferase FICD

Related Entries With Identical Sequence