SMTL ID : 4u0z.1 (6 other biounits)

Eukaryotic Fic Domain containing protein with bound APCPP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

homo-dimer

Ligands

2 x APC: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER(Non-covalent)

APC.1: 16 residues within 4Å: Chain A: V.215, H.218, V.259, H.262, D.266, G.267, N.268, G.269, R.270, R.273, Y.298, Y.299, L.302, E.303, N.306 Ligands: MG.2 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:G.267, A:N.268, A:N.268, A:G.269, A:R.270, A:R.270, A:R.273, A:Y.298, A:Y.299, A:E.303, A:E.303, A:N.306 Water bridges: A:Y.299, A:Y.299 Salt bridges: A:R.270, A:R.273 APC.3: 16 residues within 4Å: Chain B: V.215, H.218, V.259, H.262, D.266, G.267, N.268, G.269, R.270, R.273, Y.298, Y.299, L.302, E.303, N.306 Ligands: MG.4 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:G.267, B:N.268, B:N.268, B:G.269, B:R.270, B:R.270, B:R.273, B:Y.298, B:Y.298, B:Y.299, B:Y.299, B:E.303, B:N.306 Water bridges: B:E.133, B:E.162 Salt bridges: B:R.270, B:R.273

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.266, R.270 Ligands: APC.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.266, H2O.5, H2O.5 MG.4: 3 residues within 4Å: Chain B: E.133, D.266 Ligands: APC.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bunney, T.D. et al., Crystal structure of the human, FIC-domain containing protein HYPE and implications for its functions. Structure (2014)

Release Date

2014-12-10

Peptides

Adenosine monophosphate-protein transferase FICD: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
A

Adenosine monophosphate-protein transferase FICD

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