SMTL ID : 4u0j.1

Crystal structure of Mycobacterium tuberculosis enoyl reductase (INHA) complexed with 1-CYCLOHEXYL-5-OXO-N-PHENYLPYRROLIDINE-3-CARBOXAMIDE, refined with new ligand restraints

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 29 residues within 4Å: Chain A: G.14, I.15, I.16, S.20, I.21, A.22, F.41, L.63, D.64, V.65, Q.66, S.94, I.95, G.96, F.97, I.122, M.147, D.148, F.149, Y.158, M.161, K.165, A.191, G.192, P.193, I.194, T.196, M.199 Ligands: 566.2 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:I.21, A:F.149, A:A.191 Hydrogen bonds: A:G.14, A:S.20, A:I.21, A:D.64, A:V.65, A:I.95, A:G.96, A:K.165, A:I.194, A:I.194, A:T.196, A:T.196 Water bridges: A:A.22, A:F.41, A:F.41, A:F.41, A:S.94, A:I.95 pi-Stacking: A:F.41 NAD.3: 29 residues within 4Å: Chain B: G.14, I.15, I.16, S.20, I.21, A.22, F.41, L.63, D.64, V.65, Q.66, S.94, I.95, G.96, F.97, I.122, M.147, D.148, F.149, Y.158, M.161, K.165, A.191, G.192, P.193, I.194, T.196, M.199 Ligands: 566.4 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:I.21, B:F.149, B:A.191 Hydrogen bonds: B:G.14, B:S.20, B:I.21, B:D.64, B:V.65, B:I.95, B:G.96, B:K.165, B:I.194, B:I.194, B:T.196, B:T.196 Water bridges: B:A.22, B:F.41, B:F.41, B:F.41, B:S.94, B:I.95 pi-Stacking: B:F.41 NAD.5: 29 residues within 4Å: Chain C: G.14, I.15, I.16, S.20, I.21, A.22, F.41, L.63, D.64, V.65, Q.66, S.94, I.95, G.96, F.97, I.122, M.147, D.148, F.149, Y.158, M.161, K.165, A.191, G.192, P.193, I.194, T.196, M.199 Ligands: 566.6 23 PLIP interactions: 23 interactions with chain C Hydrophobic interactions: C:I.21, C:F.149, C:A.191 Hydrogen bonds: C:G.14, C:S.20, C:I.21, C:D.64, C:D.64, C:V.65, C:I.95, C:G.96, C:K.165, C:I.194, C:I.194, C:T.196, C:T.196 Water bridges: C:A.22, C:F.41, C:F.41, C:F.41, C:S.94, C:I.95 pi-Stacking: C:F.41 NAD.7: 29 residues within 4Å: Chain D: G.14, I.15, I.16, S.20, I.21, A.22, F.41, L.63, D.64, V.65, Q.66, S.94, I.95, G.96, F.97, I.122, M.147, D.148, F.149, Y.158, M.161, K.165, A.191, G.192, P.193, I.194, T.196, M.199 Ligands: 566.8 23 PLIP interactions: 23 interactions with chain D Hydrophobic interactions: D:I.21, D:F.149, D:A.191 Hydrogen bonds: D:G.14, D:S.20, D:I.21, D:D.64, D:D.64, D:V.65, D:I.95, D:G.96, D:K.165, D:I.194, D:I.194, D:T.196, D:T.196 Water bridges: D:A.22, D:F.41, D:F.41, D:F.41, D:S.94, D:I.95 pi-Stacking: D:F.41

4 x 566: (3S)-1-CYCLOHEXYL-5-OXO-N-PHENYLPYRROLIDINE-3-CARBOXAMIDE(Non-covalent)

566.2: 17 residues within 4Å: Chain A: G.96, F.97, M.98, M.103, F.149, M.155, P.156, A.157, Y.158, M.161, K.165, T.196, M.199, I.202, I.215, L.218 Ligands: NAD.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.149, A:A.157, A:Y.158, A:Y.158, A:I.215, A:I.215, A:L.218 Hydrogen bonds: A:Y.158 566.4: 17 residues within 4Å: Chain B: G.96, F.97, M.98, M.103, F.149, M.155, P.156, A.157, Y.158, M.161, K.165, T.196, M.199, I.202, I.215, L.218 Ligands: NAD.3 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:F.149, B:A.157, B:Y.158, B:Y.158, B:I.215, B:I.215, B:L.218 Hydrogen bonds: B:Y.158 566.6: 17 residues within 4Å: Chain C: G.96, F.97, M.98, M.103, F.149, M.155, P.156, A.157, Y.158, M.161, K.165, T.196, M.199, I.202, I.215, L.218 Ligands: NAD.5 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:F.149, C:A.157, C:Y.158, C:Y.158, C:I.215, C:I.215, C:L.218 Hydrogen bonds: C:Y.158 566.8: 17 residues within 4Å: Chain D: G.96, F.97, M.98, M.103, F.149, M.155, P.156, A.157, Y.158, M.161, K.165, T.196, M.199, I.202, I.215, L.218 Ligands: NAD.7 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:F.149, D:A.157, D:Y.158, D:Y.158, D:I.215, D:I.215, D:L.218 Hydrogen bonds: D:Y.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, X. et al., Pyrrolidine carboxamides as a novel class of inhibitors of enoyl acyl carrier protein reductase from Mycobacterium tuberculosis. J. Med. Chem. (2006)

Release Date

2014-07-30

Peptides

Enoyl-[acyl-carrier-protein] reductase [NADH]: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Enoyl-[acyl-carrier-protein] reductase [NADH]

Related Entries With Identical Sequence