SMTL ID : 4u17.1 (1 other biounit)

Swapped dimer of the human Fyn-SH2 domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

homo-dimer

Ligands

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: R.13, R.33, S.35, T.37, S.43, K.61 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.37, A:S.43 Water bridges: A:R.13, A:R.13 Salt bridges: A:R.13, A:R.33, A:K.61 PO4.4: 7 residues within 4Å: Chain B: R.13, R.33, S.35, E.36, T.37, S.43, K.61 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:E.36, B:E.36, B:E.36, B:T.37, B:S.43, B:S.43, B:S.43 Water bridges: B:K.61 Salt bridges: B:R.13, B:R.33, B:K.61 PO4.5: 3 residues within 4Å: Chain B: E.17, H.56, V.57 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.17, B:V.57, B:V.57 PO4.6: 4 residues within 4Å: Chain A: K.105 Chain B: M.4, E.5, Y.7 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:M.4 Water bridges: A:K.105 PO4.7: 4 residues within 4Å: Chain A: R.27 Chain B: C.97, R.98, V.100 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.27, B:R.98 Salt bridges: A:R.27

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: P.102, C.103, H.104 Chain B: N.25 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.104 EDO.3: 7 residues within 4Å: Chain A: T.74, R.75, A.76, Y.88, A.93 Chain B: I.72, T.74 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.74, A:T.74, A:A.93 EDO.8: 4 residues within 4Å: Chain A: N.25 Chain B: P.102, C.103, H.104 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garcia-Pino, A. et al., Swapped dimer of the human Fyn-SH2 domain. To Be Published

Release Date

2015-07-29

Peptides

Tyrosine-protein kinase Fyn: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Tyrosine-protein kinase Fyn

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