SMTL ID : 4u17.2 (1 other biounit)

Swapped dimer of the human Fyn-SH2 domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

homo-dimer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: R.13, R.33, S.35, E.36, T.37, S.43, K.61 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.35, A:E.36, A:S.43 Salt bridges: A:R.13, A:R.33, A:K.61 PO4.2: 8 residues within 4Å: Chain A: V.101, P.102, C.103, H.104 Chain B: G.24, N.25, P.26, T.29 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.102, A:P.102, A:H.104 Salt bridges: A:H.104 PO4.4: 7 residues within 4Å: Chain B: R.13, R.33, S.35, E.36, T.37, S.43, K.61 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.35, B:E.36, B:S.43 Salt bridges: B:R.13, B:R.33, B:K.61 PO4.5: 8 residues within 4Å: Chain A: G.24, N.25, P.26, T.29 Chain B: V.101, P.102, C.103, H.104 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:P.102, B:P.102, B:H.104 Salt bridges: B:H.104

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: S.89, L.99, V.100, V.101, P.102 Chain B: F.30 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.89, A:S.89 EDO.6: 6 residues within 4Å: Chain A: F.30 Chain B: S.89, L.99, V.100, V.101, P.102 2 PLIP interactions: 2 interactions with chain B Water bridges: B:S.89, B:S.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garcia-Pino, A. et al., Swapped dimer of the human Fyn-SH2 domain. To Be Published

Release Date

2015-07-29

Peptides

Tyrosine-protein kinase Fyn: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

Tyrosine-protein kinase Fyn

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