SMTL ID : 4u31.1

Sco GlgEI-V279S in Complex with maltose-C-phosphonate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x GPM- GLC: alpha-D-glucopyranose-(1-4)-(1S)-1,5-anhydro-1-(phosphonomethyl)-D-glucitol(Non-covalent)

GPM-GLC.1: 19 residues within 4Å: Chain A: K.264, N.268, S.279, W.281, A.282, Q.324, N.352, K.355, Y.357, D.359, I.360, R.392, D.394, N.395, E.423, D.480, K.534, Y.535 Ligands: EDO.7 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:K.264, A:N.268, A:S.279, A:W.281, A:D.480, A:Y.535, A:Y.535, A:Q.324, A:Q.324, A:N.352, A:Y.357, A:R.392, A:D.394, A:N.395, A:E.423, A:D.480 Water bridges: A:K.534, A:K.355, A:Y.357, A:D.480, A:D.480, A:D.480 GPM-GLC.2: 18 residues within 4Å: Chain B: K.264, N.268, S.279, W.281, A.282, Q.324, N.352, K.355, Y.357, D.359, I.360, R.392, D.394, N.395, E.423, D.480, K.534, Y.535 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:K.264, B:S.279, B:W.281, B:D.480, B:D.480, B:Y.535, B:Q.324, B:Q.324, B:N.352, B:Y.357, B:Y.357, B:R.392, B:D.394, B:N.395, B:E.423, B:D.480 Water bridges: B:N.268, B:N.268, B:N.268, B:K.534, B:K.355, B:K.355, B:K.355, B:F.425, B:D.480

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.3: 3 residues within 4Å: Chain A: T.224, H.226, T.227 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.227 Water bridges: A:T.227 CIT.8: 4 residues within 4Å: Chain B: R.149, R.152, R.153, L.156 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.152 Salt bridges: B:R.152, B:R.152, B:R.153

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 7 residues within 4Å: Chain A: F.52, R.53, G.55 Chain B: H.397, T.426, R.427, M.430 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:H.397, B:T.426, A:G.55 Water bridges: B:R.427, B:R.427, A:R.53, A:D.86 EDO.5: 6 residues within 4Å: Chain A: L.24, D.25 Chain B: A.429, A.432, T.433, Q.436 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.25 EDO.6: 5 residues within 4Å: Chain A: Y.639, Y.646, V.647, R.648, H.657 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.648, A:R.648 EDO.7: 6 residues within 4Å: Chain A: Q.324, D.394, N.395, T.398, K.399 Ligands: GPM-GLC.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.395, A:T.398, A:K.399 Water bridges: A:I.363, A:T.398 EDO.9: 6 residues within 4Å: Chain B: Q.324, A.350, I.360, N.395, T.398, K.399 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:D.394, B:N.395, B:T.398 Water bridges: B:I.363, B:T.398, B:K.399

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lindenberger, J.J. et al., Crystal structures of Mycobacterium tuberculosis GlgE and complexes with non-covalent inhibitors. Sci Rep (2015)

Release Date

2015-07-22

Peptides

Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase 1

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