SMTL ID : 7mgy.1

Sco GlgEI-V279S in complex with 4-alpha-glucoside of valienamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

homo-dimer

Ligands

2 x ZD1: (1R,4S,5S,6R)-4-amino-5,6-dihydroxy-2-(hydroxymethyl)cyclohex-2-en-1-yl alpha-D-glucopyranoside(Non-covalent)

ZD1.1: 16 residues within 4Å: Chain A: K.264, N.268, S.279, W.281, A.282, Q.324, K.356, Y.357, D.359, I.360, D.394, N.395, E.423, D.480, K.534, Y.535 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:K.264, A:S.279, A:W.281, A:W.281, A:Q.324, A:Q.324, A:N.395, A:D.480, A:Y.535, A:Y.535 Water bridges: A:N.268, A:K.355, A:R.392, A:E.423, A:K.534 ZD1.5: 15 residues within 4Å: Chain B: K.264, N.268, S.279, W.281, A.282, Q.324, Y.357, D.359, I.360, D.394, N.395, E.423, D.480, K.534, Y.535 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:K.264, B:K.264, B:S.279, B:W.281, B:Q.324, B:Q.324, B:N.395, B:N.395, B:D.480, B:Y.535 Water bridges: B:N.268

4 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 3 residues within 4Å: Chain A: T.426, Y.445, W.448 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.449, A:R.449 PGE.3: 6 residues within 4Å: Chain A: V.64, R.66, P.72, W.75, E.105, R.191 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.66 PGE.6: 4 residues within 4Å: Chain B: S.44, R.591, Q.592, G.593 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.591, B:G.593 Water bridges: B:T.93, B:R.591 PGE.7: 3 residues within 4Å: Chain B: T.426, Y.445, W.448 2 PLIP interactions: 2 interactions with chain B Water bridges: B:R.449, B:R.449

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 3 residues within 4Å: Chain A: R.591, Q.592, G.593 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.593

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Si, A. et al., Stereoselective synthesis of a 4-⍺-glucoside of valienamine and its X-ray structure in complex with Streptomyces coelicolor GlgE1-V279S. Sci Rep (2021)

Release Date

2021-07-14

Peptides

Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase 1

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