SMTL ID : 4u90.1

GephE in complex with PEG crosslinked GABA receptor alpha3 subunit derived dimeric peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-2-4-mer

Ligands

2 x BU1: 1,4-BUTANEDIOL(Non-functional Binders)

BU1.1: 11 residues within 4Å: Chain A: V.61, R.62, A.63, D.65, G.66, R.70, V.91, I.130, V.132, Q.133, A.134 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.61, A:V.61, A:I.130 Hydrogen bonds: A:R.70, A:R.70, A:V.132, A:A.134 BU1.3: 11 residues within 4Å: Chain D: V.61, R.62, A.63, D.65, G.66, R.70, V.91, I.130, V.132, Q.133, A.134 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:V.61, D:V.61, D:I.130 Hydrogen bonds: D:R.70, D:R.70, D:V.132, D:A.134 Water bridges: D:D.65

2 x 3F8: 1,1'-[ethane-1,2-diylbis(oxyethane-2,1-diyl)]bis(1H-pyrrole-2,5-dione)(Covalent)

3F8.2: 12 residues within 4Å: Chain B: Y.8, P.9, C.10 Chain C: Y.8, C.10 Chain E: Y.8, P.9, C.10 Chain F: Y.8, P.9, C.10 Ligands: 3F8.4 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain F Hydrophobic interactions: C:Y.8, C:C.10, F:C.10 3F8.4: 12 residues within 4Å: Chain B: Y.8, P.9, C.10 Chain C: Y.8, P.9, C.10 Chain E: Y.8, P.9, C.10 Chain F: Y.8, C.10 Ligands: 3F8.2 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain F Hydrophobic interactions: C:C.10, F:Y.8, F:C.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maric, H.M. et al., Design and Synthesis of High-Affinity Dimeric Inhibitors Targeting the Interactions between Gephyrin and Inhibitory Neurotransmitter Receptors. Angew.Chem.Int.Ed.Engl. (2015)

Release Date

2014-12-10

Peptides

Gephyrin: AD
Gamma-aminobutyric acid receptor subunit alpha-3: BCEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

B
D

C
E

E
D

F
E

Gephyrin

Gamma-aminobutyric acid receptor subunit alpha-3

Related Entries With Identical Sequence