- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.2: 5 residues within 4Å:- Chain A: G.190, E.192, D.232, G.256
- Ligands: ADP.1
No protein-ligand interaction detected (PLIP)MN.3: 5 residues within 4Å:- Chain A: G.256, S.258, G.260, D.263
- Ligands: ADP.1
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.263, A:D.263, H2O.14, H2O.19
MN.11: 5 residues within 4Å:- Chain B: G.190, E.192, D.232, G.256
- Ligands: ADP.10
No protein-ligand interaction detected (PLIP)MN.12: 5 residues within 4Å:- Chain B: G.256, S.258, G.260, D.263
- Ligands: ADP.10
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.263, B:D.263, H2O.1, H2O.6
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.4: 6 residues within 4Å:- Chain A: R.387, L.419
- Chain B: R.327, D.334, R.336, T.338
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:L.419
- Water bridges: A:R.387, A:R.387
- Salt bridges: A:R.387
PO4.5: 5 residues within 4Å:- Chain A: V.183, R.247, A.248, D.249, K.302
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.247
- Water bridges: A:D.249, A:K.302
- Salt bridges: A:K.302
PO4.13: 6 residues within 4Å:- Chain A: R.327, D.334, R.336, T.338
- Chain B: R.387, L.419
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:L.419
- Water bridges: B:R.387, B:R.387
- Salt bridges: B:R.387
PO4.14: 5 residues within 4Å:- Chain B: V.183, R.247, A.248, D.249, K.302
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.247
- Water bridges: B:D.249, B:D.249, B:K.302
- Salt bridges: B:K.302
- 6 x ACT: ACETATE ION(Non-functional Binders)
ACT.6: 3 residues within 4Å:- Chain A: L.6, S.8, F.283
No protein-ligand interaction detected (PLIP)ACT.7: 7 residues within 4Å:- Chain A: M.9, D.10, F.13, L.320, I.339, M.394, M.414
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.10
ACT.8: 4 residues within 4Å:- Chain A: M.19, T.20, P.21, R.301
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.20
- Salt bridges: A:R.301
ACT.15: 3 residues within 4Å:- Chain B: L.6, S.8, F.283
No protein-ligand interaction detected (PLIP)ACT.16: 7 residues within 4Å:- Chain B: M.9, D.10, F.13, L.320, I.339, M.394, M.414
No protein-ligand interaction detected (PLIP)ACT.17: 4 residues within 4Å:- Chain B: M.19, T.20, P.21, R.301
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:T.20
- Salt bridges: B:R.301
- 2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.9: 12 residues within 4Å:- Chain A: S.208, T.212, P.311, V.312, V.315, R.358
- Chain B: L.48, I.147, S.163, G.166, L.167, T.170
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:T.212, A:R.358, B:T.170
MPD.18: 12 residues within 4Å:- Chain A: L.48, I.147, S.163, G.166, L.167, T.170
- Chain B: S.208, T.212, P.311, V.312, V.315, R.358
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:T.212, B:R.358, A:T.170
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kasaragod, V.B. et al., Structural Framework for Metal Incorporation during Molybdenum Cofactor Biosynthesis. Structure (2016)
- Release Date
- 2016-05-04
- Peptides
- Gephyrin: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 6 x ACT: ACETATE ION(Non-functional Binders)
- 2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kasaragod, V.B. et al., Structural Framework for Metal Incorporation during Molybdenum Cofactor Biosynthesis. Structure (2016)
- Release Date
- 2016-05-04
- Peptides
- Gephyrin: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A