SMTL ID : 4uhv.1 (1 other biounit)

The structure of VgrG1, the needle tip of the bacterial Type VI Secretion System

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

75 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: L.13, P.15 Ligand excluded by PLIP CL.2: 1 residues within 4Å: Chain A: E.171 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain A: R.237 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: R.26, E.28 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: P.360 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: R.136, R.273 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: N.586, A.615 Chain B: N.593 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain A: R.233, Q.264, S.265 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain A: D.348, A.349, S.350, Q.351 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain A: R.107, Q.120 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain A: D.129, R.174 Ligand excluded by PLIP CL.12: 6 residues within 4Å: Chain A: E.379, R.472, S.473, G.476, G.477 Chain B: K.417 Ligand excluded by PLIP CL.13: 2 residues within 4Å: Chain A: E.42, F.86 Ligand excluded by PLIP CL.14: 2 residues within 4Å: Chain A: P.259, D.439 Ligand excluded by PLIP CL.15: 3 residues within 4Å: Chain A: N.401, E.402, N.403 Ligand excluded by PLIP CL.16: 2 residues within 4Å: Chain A: E.330, T.331 Ligand excluded by PLIP CL.19: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.20: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.21: 1 residues within 4Å: Chain C: A.480 Ligand excluded by PLIP CL.22: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.23: 1 residues within 4Å: Chain A: D.267 Ligand excluded by PLIP CL.24: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.25: 1 residues within 4Å: Chain A: I.244 Ligand excluded by PLIP CL.26: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.27: 1 residues within 4Å: Chain A: R.5 Ligand excluded by PLIP CL.33: 2 residues within 4Å: Chain B: L.13, P.15 Ligand excluded by PLIP CL.34: 1 residues within 4Å: Chain B: E.171 Ligand excluded by PLIP CL.35: 1 residues within 4Å: Chain B: R.237 Ligand excluded by PLIP CL.36: 2 residues within 4Å: Chain B: R.26, E.28 Ligand excluded by PLIP CL.37: 1 residues within 4Å: Chain B: P.360 Ligand excluded by PLIP CL.38: 2 residues within 4Å: Chain B: R.136, R.273 Ligand excluded by PLIP CL.39: 3 residues within 4Å: Chain B: N.586, A.615 Chain C: N.593 Ligand excluded by PLIP CL.40: 3 residues within 4Å: Chain B: R.233, Q.264, S.265 Ligand excluded by PLIP CL.41: 4 residues within 4Å: Chain B: D.348, A.349, S.350, Q.351 Ligand excluded by PLIP CL.42: 2 residues within 4Å: Chain B: R.107, Q.120 Ligand excluded by PLIP CL.43: 2 residues within 4Å: Chain B: D.129, R.174 Ligand excluded by PLIP CL.44: 6 residues within 4Å: Chain B: E.379, R.472, S.473, G.476, G.477 Chain C: K.417 Ligand excluded by PLIP CL.45: 2 residues within 4Å: Chain B: E.42, F.86 Ligand excluded by PLIP CL.46: 2 residues within 4Å: Chain B: P.259, D.439 Ligand excluded by PLIP CL.47: 3 residues within 4Å: Chain B: N.401, E.402, N.403 Ligand excluded by PLIP CL.48: 2 residues within 4Å: Chain B: E.330, T.331 Ligand excluded by PLIP CL.51: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.52: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.53: 1 residues within 4Å: Chain A: A.480 Ligand excluded by PLIP CL.54: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.55: 1 residues within 4Å: Chain B: D.267 Ligand excluded by PLIP CL.56: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.57: 1 residues within 4Å: Chain B: I.244 Ligand excluded by PLIP CL.58: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.59: 1 residues within 4Å: Chain B: R.5 Ligand excluded by PLIP CL.65: 2 residues within 4Å: Chain C: L.13, P.15 Ligand excluded by PLIP CL.66: 1 residues within 4Å: Chain C: E.171 Ligand excluded by PLIP CL.67: 1 residues within 4Å: Chain C: R.237 Ligand excluded by PLIP CL.68: 2 residues within 4Å: Chain C: R.26, E.28 Ligand excluded by PLIP CL.69: 1 residues within 4Å: Chain C: P.360 Ligand excluded by PLIP CL.70: 2 residues within 4Å: Chain C: R.136, R.273 Ligand excluded by PLIP CL.71: 3 residues within 4Å: Chain A: N.593 Chain C: N.586, A.615 Ligand excluded by PLIP CL.72: 3 residues within 4Å: Chain C: R.233, Q.264, S.265 Ligand excluded by PLIP CL.73: 4 residues within 4Å: Chain C: D.348, A.349, S.350, Q.351 Ligand excluded by PLIP CL.74: 2 residues within 4Å: Chain C: R.107, Q.120 Ligand excluded by PLIP CL.75: 2 residues within 4Å: Chain C: D.129, R.174 Ligand excluded by PLIP CL.76: 6 residues within 4Å: Chain A: K.417 Chain C: E.379, R.472, S.473, G.476, G.477 Ligand excluded by PLIP CL.77: 2 residues within 4Å: Chain C: E.42, F.86 Ligand excluded by PLIP CL.78: 2 residues within 4Å: Chain C: P.259, D.439 Ligand excluded by PLIP CL.79: 3 residues within 4Å: Chain C: N.401, E.402, N.403 Ligand excluded by PLIP CL.80: 2 residues within 4Å: Chain C: E.330, T.331 Ligand excluded by PLIP CL.83: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.84: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.85: 1 residues within 4Å: Chain B: A.480 Ligand excluded by PLIP CL.86: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.87: 1 residues within 4Å: Chain C: D.267 Ligand excluded by PLIP CL.88: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.89: 1 residues within 4Å: Chain C: I.244 Ligand excluded by PLIP CL.90: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.91: 1 residues within 4Å: Chain C: R.5 Ligand excluded by PLIP

21 x NA: SODIUM ION(Non-functional Binders)

NA.17: 1 residues within 4Å: Chain A: S.553 Ligand excluded by PLIP NA.18: 2 residues within 4Å: Chain A: T.201, L.202 Ligand excluded by PLIP NA.28: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.29: 1 residues within 4Å: Chain A: W.96 Ligand excluded by PLIP NA.30: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.31: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.32: 1 residues within 4Å: Chain A: K.376 Ligand excluded by PLIP NA.49: 1 residues within 4Å: Chain B: S.553 Ligand excluded by PLIP NA.50: 2 residues within 4Å: Chain B: T.201, L.202 Ligand excluded by PLIP NA.60: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.61: 1 residues within 4Å: Chain B: W.96 Ligand excluded by PLIP NA.62: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.63: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.64: 1 residues within 4Å: Chain B: K.376 Ligand excluded by PLIP NA.81: 1 residues within 4Å: Chain C: S.553 Ligand excluded by PLIP NA.82: 2 residues within 4Å: Chain C: T.201, L.202 Ligand excluded by PLIP NA.92: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.93: 1 residues within 4Å: Chain C: W.96 Ligand excluded by PLIP NA.94: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.95: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.96: 1 residues within 4Å: Chain C: K.376 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Spinola-Amilibia, M. et al., The Structure of Vgrg1 from Pseudomonas Aeruginosa, the Needle Tip of the Bacterial Type Vi Secretion System. Acta Crystallogr.,Sect.D (2016)

Release Date

2016-01-27

Peptides

VGRG1, VALINE-GLYCINE REPEAT PROTEIN G1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

VGRG1, VALINE-GLYCINE REPEAT PROTEIN G1

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