SMTL ID : 4uhv.2 (1 other biounit)

The structure of VgrG1, the needle tip of the bacterial Type VI Secretion System

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

39 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: R.502 Chain C: N.510, D.511 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: L.226, N.227, E.239, V.240 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: Q.232, R.233 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain A: K.642 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: K.470, P.479, F.482 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: D.132, A.133 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: H.518, D.519 Ligand excluded by PLIP CL.12: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.13: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.14: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.15: 1 residues within 4Å: Chain A: Q.112 Ligand excluded by PLIP CL.16: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.17: 2 residues within 4Å: Chain A: D.383 Chain B: P.461 Ligand excluded by PLIP CL.20: 3 residues within 4Å: Chain A: N.510, D.511 Chain B: R.502 Ligand excluded by PLIP CL.21: 4 residues within 4Å: Chain B: L.226, N.227, E.239, V.240 Ligand excluded by PLIP CL.22: 2 residues within 4Å: Chain B: Q.232, R.233 Ligand excluded by PLIP CL.23: 1 residues within 4Å: Chain B: K.642 Ligand excluded by PLIP CL.24: 3 residues within 4Å: Chain B: K.470, P.479, F.482 Ligand excluded by PLIP CL.25: 2 residues within 4Å: Chain B: D.132, A.133 Ligand excluded by PLIP CL.26: 2 residues within 4Å: Chain B: H.518, D.519 Ligand excluded by PLIP CL.31: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.32: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.33: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.34: 1 residues within 4Å: Chain B: Q.112 Ligand excluded by PLIP CL.35: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.36: 2 residues within 4Å: Chain B: D.383 Chain C: P.461 Ligand excluded by PLIP CL.39: 3 residues within 4Å: Chain B: N.510, D.511 Chain C: R.502 Ligand excluded by PLIP CL.40: 4 residues within 4Å: Chain C: L.226, N.227, E.239, V.240 Ligand excluded by PLIP CL.41: 2 residues within 4Å: Chain C: Q.232, R.233 Ligand excluded by PLIP CL.42: 1 residues within 4Å: Chain C: K.642 Ligand excluded by PLIP CL.43: 3 residues within 4Å: Chain C: K.470, P.479, F.482 Ligand excluded by PLIP CL.44: 2 residues within 4Å: Chain C: D.132, A.133 Ligand excluded by PLIP CL.45: 2 residues within 4Å: Chain C: H.518, D.519 Ligand excluded by PLIP CL.50: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.51: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.52: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.53: 1 residues within 4Å: Chain C: Q.112 Ligand excluded by PLIP CL.54: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.55: 2 residues within 4Å: Chain A: P.461 Chain C: D.383 Ligand excluded by PLIP

18 x NA: SODIUM ION(Non-functional Binders)

NA.8: 1 residues within 4Å: Chain A: D.609 Ligand excluded by PLIP NA.9: 2 residues within 4Å: Chain A: G.622, Q.632 Ligand excluded by PLIP NA.10: 1 residues within 4Å: Chain A: E.261 Ligand excluded by PLIP NA.11: 1 residues within 4Å: Chain A: H.397 Ligand excluded by PLIP NA.18: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.19: 1 residues within 4Å: Chain A: D.603 Ligand excluded by PLIP NA.27: 1 residues within 4Å: Chain B: D.609 Ligand excluded by PLIP NA.28: 2 residues within 4Å: Chain B: G.622, Q.632 Ligand excluded by PLIP NA.29: 1 residues within 4Å: Chain B: E.261 Ligand excluded by PLIP NA.30: 1 residues within 4Å: Chain B: H.397 Ligand excluded by PLIP NA.37: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.38: 1 residues within 4Å: Chain B: D.603 Ligand excluded by PLIP NA.46: 1 residues within 4Å: Chain C: D.609 Ligand excluded by PLIP NA.47: 2 residues within 4Å: Chain C: G.622, Q.632 Ligand excluded by PLIP NA.48: 1 residues within 4Å: Chain C: E.261 Ligand excluded by PLIP NA.49: 1 residues within 4Å: Chain C: H.397 Ligand excluded by PLIP NA.56: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.57: 1 residues within 4Å: Chain C: D.603 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Spinola-Amilibia, M. et al., The Structure of Vgrg1 from Pseudomonas Aeruginosa, the Needle Tip of the Bacterial Type Vi Secretion System. Acta Crystallogr.,Sect.D (2016)

Release Date

2016-01-27

Peptides

VGRG1, VALINE-GLYCINE REPEAT PROTEIN G1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

VGRG1, VALINE-GLYCINE REPEAT PROTEIN G1

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