SMTL ID : 4uj4.3 (2 other biounits)

Crystal structure of human Rab11-Rabin8-FIP3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.20 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.1: 25 residues within 4Å: Chain A: D.18, S.19, G.20, V.21, G.22, K.23, S.24, N.25, F.35, N.36, L.37, S.39, K.40, S.41, T.42, G.68, N.123, K.124, D.126, L.127, S.153, A.154, L.155 Chain B: Y.158 Ligands: MG.2 24 PLIP interactions: 23 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.20, A:V.21, A:G.22, A:K.23, A:K.23, A:S.24, A:N.25, A:N.25, A:N.36, A:S.39, A:K.40, A:T.42, A:T.42, A:T.42, A:G.68, A:N.123, A:K.124, A:K.124, A:A.154, A:L.155, B:Y.158 Salt bridges: A:D.126 pi-Stacking: A:F.35, A:F.35 GNP.3: 24 residues within 4Å: Chain D: S.19, G.20, V.21, G.22, K.23, S.24, N.25, F.35, N.36, L.37, S.39, S.41, T.42, A.67, G.68, N.123, K.124, D.126, L.127, S.153, A.154, L.155 Chain E: Y.158 Ligands: MG.4 22 PLIP interactions: 21 interactions with chain D, 1 interactions with chain E Hydrogen bonds: D:G.20, D:V.21, D:G.22, D:K.23, D:K.23, D:S.24, D:S.24, D:N.25, D:N.25, D:N.36, D:T.42, D:T.42, D:G.68, D:N.123, D:K.124, D:K.124, D:A.154, D:L.155, E:Y.158 Salt bridges: D:D.126 pi-Stacking: D:F.35, D:F.35

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: S.24, T.42, D.65 Ligands: GNP.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:S.24, A:T.42 MG.4: 5 residues within 4Å: Chain D: S.24, T.42, D.65, T.66 Ligands: GNP.3 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:S.24, D:T.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vetter, M. et al., Structure of Rab11-FIP3-Rabin8 reveals simultaneous binding of FIP3 and Rabin8 effectors to Rab11. Nat. Struct. Mol. Biol. (2015)

Release Date

2015-08-12

Peptides

Ras-related protein Rab-11A: AD
Rab-3A-interacting protein: BE
Rab11 family-interacting protein 3: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
J

B
B

E
K

C
C

F
L

Ras-related protein Rab-11A

Rab-3A-interacting protein

Rab11 family-interacting protein 3

Related Entries With Identical Sequence