- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x BVQ: NORPSEUDO-B12(Non-covalent)
BVQ.3: 37 residues within 4Å:- Chain A: I.22, Y.31, T.36, A.37, F.38, Y.170, T.242, Y.246, M.249, N.272, G.275, Q.276, S.277, V.278, A.279, A.289, M.292, G.293, A.294, C.295, P.302, V.304, R.305, L.306, H.357, N.358, Q.359, K.362, Q.364, Y.369, C.372, W.376, Y.382, C.386, V.387
- Ligands: SF4.2, IOD.9
37 PLIP interactions:37 interactions with chain A,- Hydrophobic interactions: A:T.36, A:A.37, A:F.38, A:F.38, A:F.38, A:N.272, A:Y.369, A:Y.369, A:Y.369, A:V.387
- Hydrogen bonds: A:A.37, A:Y.170, A:T.242, A:N.272, A:N.272, A:S.277, A:A.279, A:M.292, A:G.293, A:G.293, A:C.295, A:C.295, A:R.305, A:R.305, A:L.306, A:H.357, A:N.358, A:Q.359, A:Q.364, A:Y.369, A:Y.382
- Water bridges: A:V.278, A:W.365, A:N.367, A:Y.382
- Salt bridges: A:K.362
- pi-Stacking: A:F.38
BVQ.16: 37 residues within 4Å:- Chain B: Y.31, T.36, A.37, F.38, Y.170, T.242, Y.246, M.249, N.272, G.275, Q.276, S.277, V.278, A.279, A.289, M.292, G.293, A.294, C.295, P.302, V.304, R.305, L.306, H.357, N.358, Q.359, K.362, Q.364, Y.369, C.372, L.373, W.376, Y.382, C.386, V.387
- Ligands: SF4.15, IOD.19
36 PLIP interactions:36 interactions with chain B,- Hydrophobic interactions: B:T.36, B:A.37, B:F.38, B:F.38, B:N.272, B:Y.369, B:Y.369, B:L.373, B:V.387
- Hydrogen bonds: B:Y.31, B:A.37, B:Y.170, B:T.242, B:T.242, B:Y.246, B:N.272, B:G.275, B:S.277, B:A.279, B:M.292, B:G.293, B:G.293, B:C.295, B:C.295, B:R.305, B:R.305, B:L.306, B:H.357, B:N.358, B:Q.359, B:Q.364
- Water bridges: B:V.278, B:W.365, B:Y.369, B:Y.369
- Salt bridges: B:K.362
- 7 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 7 residues within 4Å:- Chain A: F.38, T.39, F.44, W.56, N.101, L.186, E.189
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:W.56, A:Y.106, A:E.189
GOL.5: 6 residues within 4Å:- Chain A: F.110, F.111, L.113, M.119, M.254
- Chain B: F.111
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:F.110
- Water bridges: A:L.113, A:T.120, B:T.97
GOL.6: 4 residues within 4Å:- Chain A: E.330, P.348, R.349, W.365
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.349, A:R.349
- Water bridges: A:G.347, A:W.365
GOL.7: 2 residues within 4Å:- Chain A: R.349, T.350
2 PLIP interactions:2 interactions with chain A- Water bridges: A:R.349, A:R.349
GOL.8: 6 residues within 4Å:- Chain A: R.109, F.110, I.176, P.177, A.178, V.180
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:F.110, A:P.177, A:V.180
- Water bridges: A:F.110, A:Y.182
GOL.17: 8 residues within 4Å:- Chain B: F.38, T.39, F.44, W.56, N.101, Y.102, L.186, E.189
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.189
- Water bridges: B:E.189
GOL.18: 6 residues within 4Å:- Chain A: L.98, F.111
- Chain B: F.110, L.113, M.119, M.254
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:F.110
- Water bridges: B:T.120, B:T.120
- 11 x IOD: IODIDE ION(Non-functional Binders)
IOD.9: 5 residues within 4Å:- Chain A: F.38, Y.246, R.305
- Ligands: BVQ.3, IOD.10
Ligand excluded by PLIPIOD.10: 4 residues within 4Å:- Chain A: F.38, Y.102, Y.246
- Ligands: IOD.9
Ligand excluded by PLIPIOD.11: 4 residues within 4Å:- Chain A: R.152, V.159, S.455, R.460
Ligand excluded by PLIPIOD.12: 3 residues within 4Å:- Chain A: R.30, V.195, F.196
Ligand excluded by PLIPIOD.13: 2 residues within 4Å:- Chain A: N.235, I.432
Ligand excluded by PLIPIOD.19: 5 residues within 4Å:- Chain B: F.38, Y.246, R.305
- Ligands: BVQ.16, IOD.20
Ligand excluded by PLIPIOD.20: 4 residues within 4Å:- Chain B: F.38, Y.102, Y.246
- Ligands: IOD.19
Ligand excluded by PLIPIOD.21: 3 residues within 4Å:- Chain B: R.152, V.159, S.455
Ligand excluded by PLIPIOD.22: 3 residues within 4Å:- Chain B: R.30, V.195, F.196
Ligand excluded by PLIPIOD.23: 4 residues within 4Å:- Chain B: R.109, P.177, A.178, K.192
Ligand excluded by PLIPIOD.24: 1 residues within 4Å:- Chain B: S.115
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bommer, M. et al., Structural Basis for Organohalide Respiration. Science (2014)
- Release Date
- 2014-10-15
- Peptides
- TETRACHLOROETHENE REDUCTIVE DEHALOGENASE CATALYTIC SUBUNIT PCEA: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x BVQ: NORPSEUDO-B12(Non-covalent)
- 7 x GOL: GLYCEROL(Non-functional Binders)
- 11 x IOD: IODIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bommer, M. et al., Structural Basis for Organohalide Respiration. Science (2014)
- Release Date
- 2014-10-15
- Peptides
- TETRACHLOROETHENE REDUCTIVE DEHALOGENASE CATALYTIC SUBUNIT PCEA: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B