- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x BVQ: NORPSEUDO-B12(Non-covalent)
BVQ.3: 38 residues within 4Å:- Chain A: I.22, Y.31, T.36, A.37, F.38, Y.170, T.242, Y.246, M.249, N.272, G.275, Q.276, S.277, V.278, A.279, A.289, M.292, G.293, A.294, C.295, P.302, V.304, R.305, L.306, K.308, H.357, N.358, Q.359, K.362, Q.364, Y.369, C.372, W.376, Y.382, C.386, V.387
- Ligands: SF4.2, TBP.10
39 PLIP interactions:38 interactions with chain A, 1 Ligand-Water interactions,- Hydrophobic interactions: A:T.36, A:A.37, A:F.38, A:F.38, A:F.38, A:N.272, A:Y.369, A:Y.369, A:Y.369, A:V.387
- Hydrogen bonds: A:Y.31, A:A.37, A:Y.170, A:T.242, A:T.242, A:N.272, A:G.275, A:S.277, A:M.292, A:G.293, A:G.293, A:C.295, A:C.295, A:R.305, A:R.305, A:L.306, A:K.308, A:H.357, A:N.358, A:Q.359, A:Q.364
- Water bridges: A:V.278, A:S.290, A:S.290, A:W.365, A:Y.382
- Salt bridges: A:K.362
- pi-Stacking: A:F.38
- Metal complexes: H2O.1
BVQ.14: 39 residues within 4Å:- Chain B: I.22, Y.31, T.36, A.37, F.38, Y.170, T.242, Y.246, M.249, N.272, G.275, Q.276, S.277, V.278, A.279, A.289, M.292, G.293, A.294, C.295, P.302, V.304, R.305, L.306, K.308, H.357, N.358, Q.359, K.362, Q.364, Y.369, C.372, L.373, W.376, Y.382, C.386, V.387
- Ligands: SF4.13, TBP.17
41 PLIP interactions:40 interactions with chain B, 1 Ligand-Water interactions- Hydrophobic interactions: B:T.36, B:A.37, B:F.38, B:F.38, B:F.38, B:N.272, B:Y.369, B:Y.369, B:Y.369, B:L.373, B:V.387
- Hydrogen bonds: B:Y.31, B:A.37, B:Y.170, B:T.242, B:T.242, B:N.272, B:G.275, B:S.277, B:A.279, B:M.292, B:G.293, B:G.293, B:C.295, B:C.295, B:R.305, B:R.305, B:L.306, B:K.308, B:H.357, B:N.358, B:Q.359, B:Q.364, B:Y.369
- Water bridges: B:V.278, B:S.290, B:W.365, B:N.367
- Salt bridges: B:K.362
- pi-Stacking: B:F.38
- Metal complexes: H2O.17
- 2 x BEN: BENZAMIDINE(Non-functional Binders)
BEN.4: 7 residues within 4Å:- Chain A: T.39, P.41, F.44, F.45, E.189
- Ligands: GOL.5, BEN.11
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:F.44, A:F.45, A:F.45
- Hydrogen bonds: A:T.39
- Water bridges: A:L.186, A:E.189
BEN.11: 4 residues within 4Å:- Chain A: V.34, T.39, E.189
- Ligands: BEN.4
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:V.34
- 7 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 8 residues within 4Å:- Chain A: F.38, F.44, W.56, N.101, Y.106, L.186, E.189
- Ligands: BEN.4
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Y.106
GOL.6: 5 residues within 4Å:- Chain A: F.110, L.113, M.119, M.254
- Chain B: F.111
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:F.110
- Water bridges: A:T.120, A:T.120, B:T.97
GOL.7: 4 residues within 4Å:- Chain A: E.330, P.348, R.349, W.365
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.330, A:R.349, A:R.349
GOL.8: 3 residues within 4Å:- Chain A: R.349, T.350, F.351
3 PLIP interactions:3 interactions with chain A- Water bridges: A:R.349, A:R.349, A:F.351
GOL.9: 2 residues within 4Å:- Chain A: D.322, G.324
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.322
- Water bridges: A:F.323, A:G.324
GOL.15: 6 residues within 4Å:- Chain B: F.38, T.39, W.56, N.101, L.186, E.189
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:F.38, B:E.189
GOL.16: 6 residues within 4Å:- Chain A: L.98, F.111
- Chain B: F.110, L.113, M.119, M.254
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:F.110, B:T.120
- Water bridges: B:T.120, B:T.120
- 2 x TBP: 2,4,6-TRIBROMOPHENOL(Non-covalent)
TBP.10: 11 residues within 4Å:- Chain A: F.38, W.56, W.96, Y.102, T.242, Y.246, N.272, R.305, W.376, Y.382
- Ligands: BVQ.3
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:W.56, A:Y.102, A:W.376
- Hydrogen bonds: A:N.272, A:R.305
- pi-Stacking: A:W.96, A:Y.382
TBP.17: 11 residues within 4Å:- Chain B: F.38, W.56, W.96, Y.102, T.242, Y.246, N.272, R.305, W.376, Y.382
- Ligands: BVQ.14
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:Y.102, B:W.376
- Hydrogen bonds: B:N.272, B:R.305
- pi-Stacking: B:W.96, B:Y.382
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kunze, C. et al., Cobamide-mediated enzymatic reductive dehalogenation via long-range electron transfer. Nat Commun (2017)
- Release Date
- 2017-07-12
- Peptides
- Tetrachloroethene reductive dehalogenase catalytically active subunit: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x BVQ: NORPSEUDO-B12(Non-covalent)
- 2 x BEN: BENZAMIDINE(Non-functional Binders)
- 7 x GOL: GLYCEROL(Non-functional Binders)
- 2 x TBP: 2,4,6-TRIBROMOPHENOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kunze, C. et al., Cobamide-mediated enzymatic reductive dehalogenation via long-range electron transfer. Nat Commun (2017)
- Release Date
- 2017-07-12
- Peptides
- Tetrachloroethene reductive dehalogenase catalytically active subunit: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B