SMTL ID : 4urm.1 (3 other biounits)

Crystal Structure of Staph GyraseB 24kDa in complex with Kibdelomycin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.94 Å

Oligo State

monomer

Ligands

1 x XAM: (1R,4AS,5S,6S,8AR)-5-{[(5S)-1-(3-O-ACETYL-4-O-CARBAMOYL-6-DEOXY-2-O-METHYL-ALPHA-L-TALOPYRANOSYL)-4-HYDROXY-2-OXO-5-(PROPAN-2-YL)-2,5-DIHYDRO-1H-PYRROL-3-YL]CARBONYL}-6-METHYL-4-METHYLIDENE-1,2,3,4,4A,5,6,8A-OCTAHYDRONAPHTHALEN-1-YL 2,6-DIDEOXY-3-C-[(1S)-1-{[(3,4-DICHLORO-5-METHYL-1H-PYRROL-2-YL)CARBONYL]AMINO}ETHYL]-BETA-D-RIBO-HEXOPYRANOSIDE(Non-covalent)

XAM.1: 24 residues within 4Å: Chain A: I.51, N.54, S.55, E.58, D.81, R.84, I.86, P.87, Q.91, K.93, M.94, A.98, V.101, I.102, V.105, L.106, H.107, A.108, G.109, G.110, K.111, S.128, T.173, I.175 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.51, A:E.58, A:A.98, A:V.101, A:I.102, A:V.105, A:T.173, A:I.175 Hydrogen bonds: A:E.58, A:E.58, A:Q.91, A:K.93, A:G.109, A:G.110, A:T.173

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, J. et al., Structures of Kibdelomycin Bound to Staphylococcus Aureus Gyrb and Pare Showed a Novel U-Shaped Binding Mode. Acs Chem.Biol. (2014)

Release Date

2014-07-30

Peptides

DNA GYRASE SUBUNIT B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA GYRASE SUBUNIT B

Related Entries With Identical Sequence