SMTL ID : 4uro.2 (3 other biounits)

Crystal Structure of Staph GyraseB 24kDa in complex with Novobiocin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

monomer

Ligands

1 x NOV: NOVOBIOCIN(Non-covalent)

NOV.1: 14 residues within 4Å: Chain A: N.54, S.55, D.57, E.58, D.81, R.84, G.85, I.86, P.87, D.89, Q.91, I.102, S.128, R.144 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.86, A:P.87, A:P.87, A:I.102 Hydrogen bonds: A:N.54, A:D.81, A:Q.91, A:Q.91, A:R.144 Water bridges: A:E.58, A:D.81, A:R.84, A:R.84, A:T.173 Salt bridges: A:R.84, A:R.144 pi-Cation interactions: A:R.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, J. et al., Structures of Kibdelomycin Bound to Staphylococcus Aureus Gyrb and Pare Showed a Novel U-Shaped Binding Mode. Acs Chem.Biol. (2014)

Release Date

2014-07-30

Peptides

DNA GYRASE SUBUNIT B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DNA GYRASE SUBUNIT B

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