SMTL ID : 4ut6.1 (1 other biounit)

Crystal structure of dengue 2 virus envelope glycoprotein in complex with the Fab fragment of the broadly neutralizing human antibody EDE2 B7

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-FUC.1: 5 residues within 4Å: Chain A: E.147, H.149, N.153, G.156, H.158 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.147, A:H.149

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain A: N.67, R.89, K.118 Chain B: G.66, M.69 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.67, A:K.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rouvinski, A. et al., Recognition Determinants of Broadly Neutralizing Human Antibodies Against Dengue Viruses. Nature (2015)

Release Date

2015-01-28

Peptides

ENVELOPE GLYCOPROTEIN E: A
BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 B7: B
BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

ENVELOPE GLYCOPROTEIN E

BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 B7

BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2

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