SMTL ID : 4utm.1

XenA - Reduced - Y183F variant in complex with 8-hydroxycoumarin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.09 Å

Oligo State

homo-dimer

Ligands

2 x FNR: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL(Non-covalent)

FNR.1: 21 residues within 4Å: Chain A: P.24, P.25, M.26, C.27, Q.28, Y.29, E.58, A.59, Q.101, H.180, H.183, R.233, A.303, W.304, G.305, V.326, G.327, R.328, L.331 Chain B: W.360 Ligands: 8CM.2 24 PLIP interactions: 23 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:M.26, A:R.328, A:L.331, B:W.360 Hydrogen bonds: A:P.25, A:C.27, A:A.59, A:Q.101, A:Q.101, A:H.180, A:H.183, A:R.233, A:R.233, A:W.304, A:G.305, A:G.327, A:R.328, A:R.328 Water bridges: A:F.306, A:G.307, A:G.307, A:R.328, A:R.328 Salt bridges: A:R.328 FNR.5: 21 residues within 4Å: Chain A: W.360 Chain B: P.24, P.25, M.26, C.27, Q.28, Y.29, E.58, A.59, Q.101, H.180, H.183, R.233, A.303, W.304, G.305, V.326, G.327, R.328, L.331 Ligands: 8CM.6 24 PLIP interactions: 23 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:M.26, B:R.328, B:L.331, A:W.360 Hydrogen bonds: B:P.25, B:C.27, B:A.59, B:Q.101, B:Q.101, B:H.180, B:H.183, B:R.233, B:R.233, B:W.304, B:G.305, B:G.327, B:R.328, B:R.328 Water bridges: B:F.306, B:G.307, B:G.307, B:R.328, B:R.328 Salt bridges: B:R.328

2 x 8CM: 8-HYDROXYCOUMARIN(Non-covalent)

8CM.2: 10 residues within 4Å: Chain A: C.27, Y.29, A.59, I.68, H.180, H.183, F.185, F.271 Chain B: W.360 Ligands: FNR.1 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:I.68, A:F.185, B:W.360 Salt bridges: A:H.180, A:H.183 8CM.6: 10 residues within 4Å: Chain A: W.360 Chain B: C.27, Y.29, A.59, I.68, H.180, H.183, F.185, F.271 Ligands: FNR.5 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:I.68, B:F.185, A:W.360 Salt bridges: B:H.180, B:H.183

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: P.70, R.113, R.127 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.113, A:R.113 Salt bridges: A:R.113, A:R.127 SO4.4: 3 residues within 4Å: Chain A: D.207, R.211, R.256 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.256, A:R.256 Salt bridges: A:R.211, A:R.256 SO4.7: 3 residues within 4Å: Chain B: P.70, R.113, R.127 4 PLIP interactions: 4 interactions with chain B Water bridges: B:R.113, B:R.113 Salt bridges: B:R.113, B:R.127 SO4.8: 3 residues within 4Å: Chain B: D.207, R.211, R.256 4 PLIP interactions: 4 interactions with chain B Water bridges: B:R.256, B:R.256 Salt bridges: B:R.211, B:R.256

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Werther, T. et al., Redox-dependent substrate-cofactor interactions in the Michaelis-complex of a flavin-dependent oxidoreductase. Nat Commun (2017)

Release Date

2015-08-05

Peptides

XENOBIOTIC REDUCTASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

XENOBIOTIC REDUCTASE

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