SMTL ID : 4uvi.1

Discovery of pyrimidine isoxazoles InhA in complex with compound 23

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 23 residues within 4Å: Chain A: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, K.165, A.191, G.192, P.193, I.194, T.196 Ligands: KXU.2 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:F.149, A:A.191 Hydrogen bonds: A:G.14, A:S.20, A:I.21, A:D.64, A:D.64, A:V.65, A:I.95, A:G.96, A:K.165, A:I.194, A:I.194, A:T.196 Water bridges: A:A.22, A:F.41, A:F.41, A:I.95 NAD.3: 24 residues within 4Å: Chain B: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, K.165, A.191, G.192, P.193, I.194, T.196, M.199 Ligands: KXU.4 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:F.149, B:F.149, B:A.191 Hydrogen bonds: B:G.14, B:S.20, B:I.21, B:D.64, B:V.65, B:I.95, B:G.96, B:K.165, B:I.194, B:I.194, B:T.196, B:T.196 Water bridges: B:G.14, B:A.22, B:F.41, B:I.95, B:L.197 pi-Stacking: B:F.41 NAD.5: 23 residues within 4Å: Chain C: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, K.165, A.191, G.192, P.193, I.194, T.196 Ligands: KXU.6 19 PLIP interactions: 19 interactions with chain C Hydrophobic interactions: C:I.21, C:F.149, C:A.191 Hydrogen bonds: C:G.14, C:I.21, C:D.64, C:D.64, C:V.65, C:I.95, C:G.96, C:K.165, C:I.194, C:I.194 Water bridges: C:G.14, C:A.22, C:F.41, C:F.41, C:I.95, C:T.196 NAD.7: 24 residues within 4Å: Chain D: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, K.165, A.191, G.192, P.193, I.194, T.196, M.199 Ligands: KXU.8 19 PLIP interactions: 19 interactions with chain D Hydrophobic interactions: D:F.149, D:A.191 Hydrogen bonds: D:G.14, D:S.20, D:I.21, D:D.64, D:V.65, D:I.95, D:G.96, D:K.165, D:I.194, D:I.194, D:T.196 Water bridges: D:T.17, D:T.17, D:A.22, D:F.41, D:F.41, D:I.95

4 x KXU: 5-{[(4,6-dimethylpyrimidin-2-yl)sulfanyl]methyl}-N-[(2-methylpyridin-4-yl)methyl]-1,2-oxazole-3-carboxamide(Non-covalent)

KXU.2: 9 residues within 4Å: Chain A: G.96, F.97, M.98, P.99, Q.100, M.103, F.149, M.161 Ligands: NAD.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Q.100, A:F.149 Hydrogen bonds: A:M.98, A:M.98 KXU.4: 12 residues within 4Å: Chain B: G.96, F.97, M.98, Q.100, M.103, F.149, Y.158, M.161, A.198, M.199, I.202 Ligands: NAD.3 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.149, B:Y.158 Hydrogen bonds: B:M.98, B:M.98 KXU.6: 9 residues within 4Å: Chain C: G.96, F.97, M.98, P.99, Q.100, M.103, F.149, M.161 Ligands: NAD.5 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:Q.100, C:Q.100, C:F.149 Hydrogen bonds: C:M.98 Water bridges: C:T.196 KXU.8: 9 residues within 4Å: Chain D: G.96, F.97, M.98, Q.100, M.103, F.149, M.161, M.199 Ligands: NAD.7 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:F.149 Hydrogen bonds: D:M.98, D:M.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Madhavapeddi, P. et al., Hitting the Target in More Than One Way: Novel, Direct Inhibitors of Mycobacterium Tuberculosis Enoyl Acp Reductase. To be Published

Release Date

2015-09-30

Peptides

ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]

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