SMTL ID : 4ux8.1

RET recognition of GDNF-GFRalpha1 ligand by a composite binding site promotes membrane-proximal self-association

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 24.00 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain D: H.47, L.48, N.49, D.52 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain F: H.47, L.48, N.49, D.52 No protein-ligand interaction detected (PLIP)

6 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain A: E.150, D.236, E.237, D.239, D.274 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.150, A:D.236, A:D.236, A:E.237, A:D.239 CA.4: 5 residues within 4Å: Chain A: E.150, D.202, R.203, E.204, D.239 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.202, A:D.239 CA.5: 6 residues within 4Å: Chain A: D.238, S.240, D.272, D.274, G.280, R.332 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.238, A:S.240, A:D.274, A:G.280 CA.6: 5 residues within 4Å: Chain B: E.150, D.236, E.237, D.239, D.274 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.150, B:D.236, B:D.236, B:E.237, B:D.239 CA.7: 5 residues within 4Å: Chain B: E.150, D.202, R.203, E.204, D.239 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.202, B:D.239 CA.8: 6 residues within 4Å: Chain B: D.238, S.240, D.272, D.274, G.280, R.332 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.238, B:S.240, B:D.274, B:G.280

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goodman, K.M. et al., Ret Recognition of Gdnf-Gfralpha1 Ligand by a Composite Binding Site Promotes Membrane-Proximal Self-Association. Cell Rep. (2014)

Release Date

2014-10-01

Peptides

PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RECEPTOR RET: AB
GDNF FAMILY RECEPTOR ALPHA-1: CE
GLIAL CELL LINE-DERIVED NEUROTROPHIC FACTOR: DF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

E
E

D
D

F
F

PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RECEPTOR RET

GDNF FAMILY RECEPTOR ALPHA-1

GLIAL CELL LINE-DERIVED NEUROTROPHIC FACTOR

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