SMTL ID : 4uxn.1

LSD1(KDM1A)-CoREST in complex with Z-Pro derivative of MC2580

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

hetero-1-1-mer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.1: 36 residues within 4Å: Chain A: G.285, S.286, G.287, V.288, S.289, L.307, E.308, A.309, R.310, G.314, G.315, R.316, L.329, G.330, A.331, M.332, V.333, T.588, A.589, V.590, T.624, L.625, P.626, V.637, K.661, W.751, W.756, S.760, Y.761, G.800, E.801, A.809, T.810, V.811, A.814 Ligands: M8A.2 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:R.316, A:W.751, A:Y.761 Hydrogen bonds: A:S.286, A:V.288, A:S.289, A:S.289, A:A.309, A:R.310, A:G.314, A:R.316, A:R.316, A:M.332, A:V.333, A:V.333, A:V.590, A:V.590, A:E.801, A:A.809, A:V.811 Salt bridges: A:R.316, A:R.316 pi-Stacking: A:W.756

1 x M8A: benzyl (2R)-2-{[4-(3-oxopropyl)phenyl]carbamoyl}pyrrolidine-1-carboxylate(Non-covalent)

M8A.2: 13 residues within 4Å: Chain A: M.332, V.333, T.335, F.538, A.539, D.555, E.559, H.564, K.661, Y.761, A.809, T.810 Ligands: FAD.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.333, A:T.335, A:F.538, A:Y.761, A:Y.761 Hydrogen bonds: A:K.661

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rodriguez, V. et al., Pyrrole- and Indole-Containing Tranylcypromine Derivatives as Novel Lysine-Specific Demethylase 1 Inhibitors Active on Cancer Cells. Chemmedchem (2015)

Release Date

2015-02-25

Peptides

LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A: A
REST COREPRESSOR 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A

REST COREPRESSOR 1

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