SMTL ID : 4v1h.1

Crystal structure of a mycobacterial ATP synthase rotor ring in complex with Iodo-Bedaquiline

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-9-mer

Ligands

9 x IBQ: IODO-BEDAQUILINE(Non-covalent)

IBQ.1: 4 residues within 4Å: Chain A: G.62, E.65, A.66, F.69 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:E.65, A:A.66, A:F.69, A:F.69, A:F.69 IBQ.2: 9 residues within 4Å: Chain A: L.63, A.66, A.67, I.70 Chain B: G.62, E.65, A.66, Y.68, F.69 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:E.65, B:A.66, B:F.69, B:F.69, B:F.69, A:I.70 Water bridges: B:E.65, B:E.65 Salt bridges: B:E.65 IBQ.4: 4 residues within 4Å: Chain C: G.62, E.65, A.66, F.69 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:E.65, C:A.66, C:F.69, C:F.69 IBQ.5: 4 residues within 4Å: Chain D: G.62, E.65, A.66, F.69 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:E.65, D:A.66, D:F.69, D:F.69, D:F.69 IBQ.6: 9 residues within 4Å: Chain D: L.63, A.66, A.67, I.70 Chain E: G.62, E.65, A.66, Y.68, F.69 9 PLIP interactions: 8 interactions with chain E, 1 interactions with chain D Hydrophobic interactions: E:E.65, E:A.66, E:F.69, E:F.69, E:F.69, D:I.70 Water bridges: E:E.65, E:E.65 Salt bridges: E:E.65 IBQ.8: 4 residues within 4Å: Chain F: G.62, E.65, A.66, F.69 4 PLIP interactions: 4 interactions with chain F Hydrophobic interactions: F:E.65, F:A.66, F:F.69, F:F.69 IBQ.9: 4 residues within 4Å: Chain G: G.62, E.65, A.66, F.69 5 PLIP interactions: 5 interactions with chain G Hydrophobic interactions: G:E.65, G:A.66, G:F.69, G:F.69, G:F.69 IBQ.10: 9 residues within 4Å: Chain G: L.63, A.66, A.67, I.70 Chain H: G.62, E.65, A.66, Y.68, F.69 9 PLIP interactions: 8 interactions with chain H, 1 interactions with chain G Hydrophobic interactions: H:E.65, H:A.66, H:F.69, H:F.69, H:F.69, G:I.70 Water bridges: H:E.65, H:E.65 Salt bridges: H:E.65 IBQ.12: 4 residues within 4Å: Chain I: G.62, E.65, A.66, F.69 4 PLIP interactions: 4 interactions with chain I Hydrophobic interactions: I:E.65, I:A.66, I:F.69, I:F.69

3 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)

TAM.3: 2 residues within 4Å: Chain B: D.4, P.5 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Q.86, A:Q.86 Hydrophobic interactions: B:D.4 TAM.7: 2 residues within 4Å: Chain E: D.4, P.5 3 PLIP interactions: 1 interactions with chain E, 2 interactions with chain D Hydrophobic interactions: E:D.4 Hydrogen bonds: D:Q.86, D:Q.86 TAM.11: 2 residues within 4Å: Chain H: D.4, P.5 3 PLIP interactions: 2 interactions with chain G, 1 interactions with chain H Hydrogen bonds: G:Q.86, G:Q.86 Hydrophobic interactions: H:D.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Preiss, L. et al., Structure of the Mycobacterial ATP Synthase Fo Rotor Ring in Complex with Iodo-Bedaquiline. To be Published

Release Date

2016-01-20

Peptides

F0F1 ATP SYNTHASE SUBUNIT C: ABCDEFGHI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

G
A

H
B

I
C

Membrane

We predict this structure to be a membrane protein.
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F0F1 ATP SYNTHASE SUBUNIT C

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